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Job request: 9108

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
ra_outcomes
ID:
w5amfdo7aaflw6cp
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Ruth Costello requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Failed
    Job identifier:
    gb2kxwpgd7so7nca
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    outpatients
    Status:
    Status: Failed
    Job identifier:
    lwembx4ytuwsz72q
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:
  #Study definition for outpatient objective (2)
  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  outpatients:
    run: stata-mp:latest analysis/outpatients.do
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        log: logs/outpatients.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:06:34

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
ra_outcomes
Requested by
Ruth Costello
Branch
main
Force run dependencies
No
Git commit hash
4a80a13
Requested actions
  • run_all

Code comparison

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