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Job request: 25843

Organisation:
University of Nottingham
Workspace:
pregnancy-testing
ID:
bfcgrcbhaazcftzc
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Helen Curtis requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '4.0'

actions:
  # generate_dataset:
  #   run: ehrql:v1 generate-dataset analysis/dataset_definition_patients.py --output output/dataset_patients.csv.gz
  #   outputs:
  #     highly_sensitive:
  #       dataset: output/dataset_patients.csv.gz

  generate_dataset_preg_2024_11_01:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_pregnancy.py --output output/dataset_preg_2024_11_01.csv.gz -- --start_date 2024-11-01
    outputs:
      highly_sensitive:
        dataset: output/dataset_preg_2024_11_01.csv.gz

  generate_dataset_preg_2025_11_01:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_pregnancy.py --output output/dataset_preg_2025_11_01.csv.gz -- --start_date 2025-11-01
    outputs:
      highly_sensitive:
        dataset: output/dataset_preg_2025_11_01.csv.gz

  generate_dataset_preg_measures:
    run: ehrql:v1 generate-measures analysis/dataset_definition_pregnancy_measures.py --output output/measures/:csv
    outputs:
      moderately_sensitive:
        dataset: output/measures/*.csv

  analyse_preg_measures:
    run: python:v2 analysis/pregnancy_checks.py --output output/measures/pregnancy_checks.csv --input output/measures/*.csv
    needs: 
      [generate_dataset_preg_measures]
    outputs:
      moderately_sensitive:
        dataset: output/measures/*by_year.csv
        charts: output/measures/*by_year.png


  generate_dataset_practices:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_practices.py --output output/dataset_practices.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/dataset_practices.csv.gz
  
  generate_patient_dataset_2024_02_01:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_patients.py --dummy-tables dummy_tables --output output/dataset_patients_2024-02-01.csv.gz -- --start_date 2024-02-01
    outputs:
      highly_sensitive:
        dataset: output/dataset_patients_2024-02-01.csv.gz
  generate_patient_dataset_2024_03_01:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_patients.py --dummy-tables dummy_tables --output output/dataset_patients_2024-03-01.csv.gz -- --start_date 2024-03-01
    outputs:
      highly_sensitive:
        dataset: output/dataset_patients_2024-03-01.csv.gz

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:10:42

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
pregnancy-testing
Requested by
Helen Curtis
Branch
main
Force run dependencies
No
Git commit hash
a024cee
Requested actions
  • generate_dataset_preg_measures
  • analyse_preg_measures

Code comparison

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