Job request: 8371
- Organisation:
- University of Surrey
- Workspace:
- adtinjectables
- ID:
- 72qt5mgpplqtd4ec
This page shows the technical details of what happened when authorised researcher AgzLeman requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
ylawxscaycbsad32
-
- Job identifier:
-
2zmy3ga3arqx6mjw
-
- Job identifier:
-
kvtci44gmgwjyqzf
-
- Job identifier:
-
we6wxuw363abxr3q
-
- Job identifier:
-
5zjawxjnb5mk2ce3
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
generate_ADT_rates_1:
run: cohortextractor:latest generate_cohort --study-definition study_definition_rates --index-date-range "2015-01-01 to 2018-08-01 by month" --skip-existing --output-dir=output --output-format=feather
outputs:
highly_sensitive:
cohort: output/measures/inp*.feather
generate_ADT_rates_2:
run: cohortextractor:latest generate_cohort --study-definition study_definition_rates --index-date-range "2018-09-01 to 2022-04-01 by month" --skip-existing --output-dir=output --output-format=feather
outputs:
highly_sensitive:
cohort: output/measures/in*.feather
generate_measures_ADT:
run: cohortextractor:latest generate_measures --study-definition study_definition_rates --skip-existing --output-dir=output/measures
needs:
[
generate_ADT_rates_1,
generate_ADT_rates_2,
]
outputs:
moderately_sensitive:
measure_csv1: output/measures/measure_ADT*_rate.csv
measure_csv2: output/measures/measure_ADTbyRegion*_rate.csv
describe_trends:
run: r:latest analysis/Descriptive_trends.R
needs:
[
generate_measures_ADT,
]
outputs:
moderately_sensitive:
Fig1: output/ADT_count.png
Fig2: output/ADT_rates.png
Fig3: output/ADTmodel_rates.png
Fig4: output/ADTbyRegion.png
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 178:13:23
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- adtinjectables
- Requested by
- AgzLeman
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 416f8ac
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request