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Job request: 23733

Organisation:
Bennett Institute
Workspace:
pharmacy-first-report
ID:
rmqwpylbic6vdrgg
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Viveck Kingsley requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_pf_consultation_measures
    Status:
    Status: Failed
    Job identifier:
    eo4vdr66n4qhth6a
    Error:
    nonzero_exit: Job exited with an error: Something went wrong with the database, please contact tech support
  • Action:
    generate_pf_medication_measures
    Status:
    Status: Failed
    Job identifier:
    7stknrwilmvrgen5
    Error:
    nonzero_exit: Job exited with an error: Something went wrong with the database, please contact tech support
  • Action:
    generate_pf_dataset_definition
    Status:
    Status: Failed
    Job identifier:
    w4zfljgtnadmzu7l
    Error:
    nonzero_exit: Job exited with an error: Something went wrong with the database, please contact tech support

Pipeline

Show project.yaml 
version: '3.0'

# Ignore this`expectation` block. It is required but not used, and will be removed in future versions.
expectations:
  population_size: 1000

actions:
  generate_pf_consultation_measures:
    run: >
      ehrql:v1 generate-measures analysis/measures_definition_pf_codes_conditions.py
      --output output/measures/pf_codes_conditions_measures.csv
    outputs:
      moderately_sensitive:
        measure: output/measures/pf_codes_conditions_measures.csv

  generate_pf_medication_measures:
    run: >
      ehrql:v1 generate-measures analysis/measures_definition_pf_medications.py
      --dummy-tables dummy_tables
      --output output/measures/pf_medications_measures.csv
    outputs:
      moderately_sensitive:
        measure: output/measures/pf_medications_measures.csv

  generate_pf_dataset_definition:
    run: >
      ehrql:v1
       generate-dataset analysis/pf_dataset_definition.py
       --test-data-file analysis/test_pf_dataset_definition.py
       --output output/population/pf_population.csv.gz
    outputs:
      highly_sensitive:
        cohort: output/population/pf_population.csv.gz

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:15

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
pharmacy-first-report
Requested by
Viveck Kingsley
Branch
main
Force run dependencies
No
Git commit hash
3012fb8
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request