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Job request: 14852

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
udca-covid
ID:
23gujoszpgq3ejbk
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Ruth Costello requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    feasibility
    Status:
    Status: Failed
    Job identifier:
    352ufj6fm65pflm5
    Error:
    nonzero_exit: Job exited with an error

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  generate_study_population_pbc:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_pbc
    outputs:
      highly_sensitive:
        cohort: output/input_pbc.csv

  feasibility:
    run: stata-mp:latest analysis/feasibility.do
    needs: [generate_study_population, generate_study_population_pbc]
    outputs:
      moderately_sensitive:
        log: logs/feasibility.log
        table: output/tables/udca*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:17

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
udca-covid
Requested by
Ruth Costello
Branch
main
Force run dependencies
No
Git commit hash
42787c8
Requested actions
  • feasibility

Code comparison

Compare the code used in this job request