Job request: 17774
- The London School of Hygiene & Tropical Medicine
This page shows the technical details of what happened when authorised researcher Ruth Costello requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
various outputs were written to. Outputs marked as
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
can be requested for release to the public, via a controlled
output review service.
- Status: Failed
- Job identifier:
version: '3.0' expectations: population_size: 1000 actions: generate_study_population: run: cohortextractor:latest generate_cohort --study-definition study_definition outputs: highly_sensitive: cohort: output/input.csv generate_study_population_pbc: run: cohortextractor:latest generate_cohort --study-definition study_definition_pbc outputs: highly_sensitive: cohort: output/input_pbc.csv feasibility: run: stata-mp:latest analysis/feasibility.do needs: [generate_study_population, generate_study_population_pbc] outputs: moderately_sensitive: log: logs/feasibility.log table: output/tables/udca*.csv #table_oba: output/tables/oba*.csv extract_udca: run: cohortextractor:latest generate_cohort --study-definition study_definition_additional needs: [generate_study_population_pbc] outputs: highly_sensitive: cohort: output/input_additional.csv prep_drug_data: run: stata-mp:latest analysis/drug_prep.do needs: [extract_udca, generate_study_population_pbc] outputs: moderately_sensitive: log: logs/drug_prep.log drug_data: output/time_varying_udca.dta drug_descriptives: run: stata-mp:latest analysis/udca_descriptives.do needs: [prep_drug_data, generate_study_population_pbc] outputs: moderately_sensitive: log: logs/udca_descriptives.log summary: output/tables/udca_descriptives.txt
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