Job request: 3930
- Organisation:
- University of Manchester
- Workspace:
- amr-uom-brit-main
- ID:
- eppbmvepq5avqtkd
This page shows the technical details of what happened when the authorised researcher Jon Massey requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
ilqktrnvjnln3v2r
-
- Job identifier:
-
wgnuvhgquu6y7brl
-
- Job identifier:
-
sxl3p35kwritkgex
-
- Job identifier:
-
u6yrtiuohfofeaqe
-
- Job identifier:
-
6fdwpwb7lyyouv5s
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2021-03-01 to today by month" --skip-existing --output-dir=output/measures --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/measures/input_*.csv.gz
generate_measures:
run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
needs: [generate_study_population]
outputs:
moderately_sensitive:
measure_csv: output/measures/measure_*.csv
describe:
run: r:latest analysis/plot/overall_ab_prescribing.R
needs: [generate_measures]
outputs:
moderately_sensitive:
cohort: output/overall.png
boxplot: output/overallbox.png
describe_percentile:
run: r:latest analysis/plot/overall_ab_prescribing_2575percentile.R
needs: [generate_measures]
outputs:
moderately_sensitive:
percentile: output/overall_25th_75th_percentile.png
describe_starpu:
run: r:latest analysis/plot/starpu_ab_prescribing.R
needs: [generate_measures]
outputs:
moderately_sensitive:
cohort: output/starpuline.png
boxplot: output/starpubox.png
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 02:04:24
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- amr-uom-brit-main
- Requested by
- Jon Massey
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- e357ce4
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request
- No previous Job Request available for comparison