Job request: 9452
- Organisation:
- University of Manchester
- Workspace:
- hospitalisation_pred
- ID:
- zsqu7dzennnzoclq
This page shows the technical details of what happened when authorised researcher ali requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
2ptuwvr7v5y3vidu
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 200000
actions:
generate_study_population_hospitalisation_urti:
run: cohortextractor:latest generate_cohort --study-definition study_definition_hospitalisation_urti --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/hospitalisation_data/input_hospitalisation_urti.csv.gz
generate_study_population_hospitalisation_lrti:
run: cohortextractor:latest generate_cohort --study-definition study_definition_hospitalisation_lrti --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/hospitalisation_data/input_hospitalisation_lrti.csv.gz
generate_study_population_hospitalisation_uti:
run: cohortextractor:latest generate_cohort --study-definition study_definition_hospitalisation_uti --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/hospitalisation_data/input_hospitalisation_uti.csv.gz
generate_study_population_hospitalisation_sinusitis:
run: cohortextractor:latest generate_cohort --study-definition study_definition_hospitalisation_sinusitis --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/hospitalisation_data/input_hospitalisation_sinusitis.csv.gz
generate_study_population_hospitalisation_ot_externa:
run: cohortextractor:latest generate_cohort --study-definition study_definition_hospitalisation_ot_externa --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/hospitalisation_data/input_hospitalisation_ot_externa.csv.gz
generate_study_population_hospitalisation_otmedia:
run: cohortextractor:latest generate_cohort --study-definition study_definition_hospitalisation_otmedia --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/hospitalisation_data/input_hospitalisation_otmedia.csv.gz
generate_notebook_hospitalisation_prediction_urti:
run: jupyter:latest jupyter nbconvert /workspace/analysis/hospitalisation_prediction_urti.ipynb --execute --to html --output-dir=/workspace/output/hospitalisation_prediction_urti --ExecutePreprocessor.timeout=86400
# needs: [generate_study_population_hospitalisation_urti,generate_study_population_bmi]
needs: [generate_study_population_hospitalisation_urti]
outputs:
moderately_sensitive:
notebook: output/hospitalisation_prediction_urti/hospitalisation_prediction_urti.html
figures: output/hospitalisation_prediction_urti/*
generate_notebook_hospitalisation_prediction_lrti:
run: jupyter:latest jupyter nbconvert /workspace/analysis/hospitalisation_prediction_lrti.ipynb --execute --to html --output-dir=/workspace/output/hospitalisation_prediction_lrti --ExecutePreprocessor.timeout=86400
# needs: [generate_study_population_hospitalisation_lrti,generate_study_population_bmi]
needs: [generate_study_population_hospitalisation_lrti]
outputs:
moderately_sensitive:
notebook: output/hospitalisation_prediction_lrti/hospitalisation_prediction_lrti.html
figures: output/hospitalisation_prediction_lrti/*
generate_notebook_hospitalisation_prediction_uti:
run: jupyter:latest jupyter nbconvert /workspace/analysis/hospitalisation_prediction_uti.ipynb --execute --to html --output-dir=/workspace/output/hospitalisation_prediction_uti --ExecutePreprocessor.timeout=86400
# needs: [generate_study_population_hospitalisation_uti,generate_study_population_bmi]
needs: [generate_study_population_hospitalisation_uti]
outputs:
moderately_sensitive:
notebook: output/hospitalisation_prediction_uti/hospitalisation_prediction_uti.html
figures: output/hospitalisation_prediction_uti/*
generate_notebook_hospitalisation_prediction_sinusitis:
run: jupyter:latest jupyter nbconvert /workspace/analysis/hospitalisation_prediction_sinusitis.ipynb --execute --to html --output-dir=/workspace/output/hospitalisation_prediction_sinusitis --ExecutePreprocessor.timeout=86400
# needs: [generate_study_population_hospitalisation_sinusitis,generate_study_population_bmi]
needs: [generate_study_population_hospitalisation_sinusitis]
outputs:
moderately_sensitive:
notebook: output/hospitalisation_prediction_sinusitis/hospitalisation_prediction_sinusitis.html
figures: output/hospitalisation_prediction_sinusitis/*
generate_notebook_hospitalisation_prediction_ot_externa:
run: jupyter:latest jupyter nbconvert /workspace/analysis/hospitalisation_prediction_ot_externa.ipynb --execute --to html --output-dir=/workspace/output/hospitalisation_prediction_ot_externa --ExecutePreprocessor.timeout=86400
# needs: [generate_study_population_hospitalisation_ot_externa,generate_study_population_bmi]
needs: [generate_study_population_hospitalisation_ot_externa]
outputs:
moderately_sensitive:
notebook: output/hospitalisation_prediction_ot_externa/hospitalisation_prediction_ot_externa.html
figures: output/hospitalisation_prediction_ot_externa/*
generate_notebook_hospitalisation_prediction_otmedia:
run: jupyter:latest jupyter nbconvert /workspace/analysis/hospitalisation_prediction_otmedia.ipynb --execute --to html --output-dir=/workspace/output/hospitalisation_prediction_otmedia --ExecutePreprocessor.timeout=86400
# needs: [generate_study_population_hospitalisation_otmedia,generate_study_population_bmi]
needs: [generate_study_population_hospitalisation_otmedia]
outputs:
moderately_sensitive:
notebook: output/hospitalisation_prediction_otmedia/hospitalisation_prediction_otmedia.html
figures: output/hospitalisation_prediction_otmedia/*
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:03:15
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- hospitalisation_pred
- Requested by
- ali
- Branch
- hosp_pred
- Force run dependencies
- No
- Git commit hash
- ec7d368
- Requested actions
-
-
generate_notebook_hospitalisation_prediction_lrti
-
Code comparison
Compare the code used in this Job Request