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Job request: 781

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
carehomes-short-data-report-main
ID:
eb25z57gi7baopq4
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Anna Schultze requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    00_generate_cohort
    Status:
    Status: Failed
    Job identifier:
    s66xadimkvzp4sn7
    Error:
    JobError: Job container has vanished
  • Action:
    01_cross_tabulations
    Status:
    Status: Failed
    Job identifier:
    7tbk7ilrdcbnpgr5
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  00_generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  01_cross_tabulations:
    run: r:latest analysis/01_cross_tabulations.R ./output/input.csv
    needs: [00_generate_cohort]
    outputs:
      moderately_sensitive:
        log: analysis/01_cross_tabulations.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:46:47

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
carehomes-short-data-report-main
Requested by
Anna Schultze
Branch
master
Force run dependencies
Yes
Git commit hash
d6faefd
Requested actions
  • run_all

Code comparison

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