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Job request: 803

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
carehomes-short-data-report-main
ID:
rjf43km2px5ia5r5
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Anna Schultze requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  00_generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  01_cross_tabulations:
    run: r:latest analysis/01_cross_tabulations.R ./output/input.csv
    needs: [00_generate_cohort]
    outputs:
      moderately_sensitive:
        log: analysis/01_cross_tabulations.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:25

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
carehomes-short-data-report-main
Requested by
Anna Schultze
Branch
master
Force run dependencies
No
Git commit hash
ed10dc4
Requested actions
  • 01_cross_tabulations

Code comparison

Compare the code used in this Job Request