Skip to content

Job request: 663

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
carehomes-short-data-report
ID:
nhxx2hltjbql5klv
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emily Nightingale requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    setup_cqc
    Status:
    Status: Succeeded
    Job identifier:
    ryhkoxjvmfvad6ow
  • Action:
    run_report
    Status:
    Status: Failed
    Job identifier:
    7ne2dtpn4kjnsvra
    Error:
    Job exited with an error code

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: input.csv
        
  setup_cqc:
    run: r:latest analysis/setup_cqc_data.R data/pc_to_msoa.csv data/carehomes_cqc.csv
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        log: cqc_setup_log.txt
        data1: cqc_all.csv
        data2: cqc_by_msoa.csv

  run_report:
    run: r:latest analysis/report.R input.csv cqc_by_msoa.csv
    needs: [generate_study_population, setup_cqc]
    outputs:
      moderately_sensitive:
        log: report_output.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:11

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
carehomes-short-data-report
Requested by
Emily Nightingale
Branch
first-commit
Force run dependencies
No
Git commit hash
9debb83
Requested actions
  • setup_cqc
  • run_report
  • run_all

Code comparison

Compare the code used in this job request