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Job request: 23617

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
disparities-comparison-rsv-flu-c19
ID:
rgerx64hrjt3npxo
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Em Prestige requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    process_dataset_older_adults_s1_specific_sensitivity
    Status:
    Failed
    Job identifier:
    2hd427uzdqqzxjcu
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/sensitivity/input_processed_older_adults_2016_2017_specific_sensitivity.csv
  • Action:
    process_dataset_adults_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    gl47cec6ktc2q6ih
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    phenotype_sensitivity_adults_s5
    Status:
    Failed
    Job identifier:
    3br2ge6z4t6ae5h7
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_adults_s7
    Status:
    Failed
    Job identifier:
    hfuqfkxfah5nwl3m
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_children_and_adolescents_s2
    Status:
    Failed
    Job identifier:
    mvdvjnriefwxoot7
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_children_and_adolescents_s4
    Status:
    Failed
    Job identifier:
    c3rpuyoeurhu2ejy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_infants_s3
    Status:
    Failed
    Job identifier:
    ymx4zbamolza7qse
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_infants_s7
    Status:
    Failed
    Job identifier:
    wtherurw66fl4kxy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_older_adults_s4
    Status:
    Failed
    Job identifier:
    qhhjs5sfmcrlctje
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_children_and_adolescents_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    ma5fu6kj6skca3tj
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_adults_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    l4ojehorlck3dtav
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_older_adults_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    dfpoufitdpyoapjt
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_older_adults_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    3nkzojwlcprte6ow
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_adults_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    al7m6zbhd4zaun5v
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_dataset_children_and_adolescents_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    iry25jslrpozhcze
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_children_and_adolescents_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    luomqgxjssit6epb
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_infants_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    rzvysnx56hhd456p
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_adults_s4
    Status:
    Failed
    Job identifier:
    sfz7dg4tlah3vrl3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_older_adults_s5
    Status:
    Failed
    Job identifier:
    vbmgiz2glggsohb4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_older_adults_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    2b5kwu4dpkohokvx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_older_adults_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    e746jh7pfaqvfebl
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_infants_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    urs6dbq3q5chto2h
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_older_adults_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    yiebhgsbgixd73ok
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_older_adults_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    bkevzdgs2ors24ib
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_infants_s4
    Status:
    Failed
    Job identifier:
    bpxwcpiozoq6wsvc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_infants_s5
    Status:
    Failed
    Job identifier:
    boxe4cha35cpd6eo
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_infants_s6
    Status:
    Failed
    Job identifier:
    inz57ok7q7avmury
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_older_adults_s1
    Status:
    Failed
    Job identifier:
    my25tjq4obasmcxf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_older_adults_s3
    Status:
    Failed
    Job identifier:
    f3cxgvpoiyjz2kr4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_infants_s1
    Status:
    Failed
    Job identifier:
    gw2eobufrirlfmbm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_infants_s2
    Status:
    Failed
    Job identifier:
    c2kkctngyfuhmdbn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_older_adults_s2
    Status:
    Failed
    Job identifier:
    bmgqdyqruz7aeyrf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_children_and_adolescents_s3
    Status:
    Failed
    Job identifier:
    h2jsg3ilhbukz4tx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_children_and_adolescents_s5
    Status:
    Failed
    Job identifier:
    qqpa7j3t2cjy7aqu
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_children_and_adolescents_s6
    Status:
    Failed
    Job identifier:
    5wirtzfdowlonh6g
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_children_and_adolescents_s7
    Status:
    Failed
    Job identifier:
    e3oxwqrqlcjg7p46
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_older_adults_s6
    Status:
    Failed
    Job identifier:
    lxpcpsqhmvkvemxx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_children_and_adolescents_s1
    Status:
    Failed
    Job identifier:
    5ysfqy733ingevky
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_adults_s6
    Status:
    Failed
    Job identifier:
    h3quzg7ytezkzdxn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_infants_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    p22u6secxpxhj6ob
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_rates_tables_specific_secondary_children_and_adolescents
    Status:
    Failed
    Job identifier:
    xpuab66igjfmvvhf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_rates_tables_specific_secondary_infants
    Status:
    Failed
    Job identifier:
    y3thatvpfthdicu6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_adults_s1
    Status:
    Failed
    Job identifier:
    ickty4223rjqudhr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_children_and_adolescents_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    la5wggpnk5vqe34z
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_infants_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    wv2gqi5zmit6gkfp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_infants_s2_specific_secondary
    Status:
    Failed
    Job identifier:
    zy5ae6oqejyvbakp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_older_adults_s1_specific_sensitivity
    Status:
    Failed
    Job identifier:
    ecsnmthtggatcmj4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    describe_dataset_adults_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    oijrar76tkwnihod
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_adults_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    ft7lemp2sn675xyy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_children_and_adolescents_s3_specific_secondary
    Status:
    Failed
    Job identifier:
    sleyjch3f4rarw3a
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_children_and_adolescents_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    e2h5yh7ilaiod5i6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_rates_tables_specific_secondary_older_adults
    Status:
    Failed
    Job identifier:
    d2v66d53h525xowe
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_adults_s2
    Status:
    Failed
    Job identifier:
    a5gti3qzoafps7hx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_adults_s3
    Status:
    Failed
    Job identifier:
    pbdp7idzkukoj5mc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_infants_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    7mbbqaeqgkbswjtp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_adults_s5_specific_secondary
    Status:
    Failed
    Job identifier:
    isltdgko4efwdu33
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_rates_tables_specific_secondary_adults
    Status:
    Failed
    Job identifier:
    4o7jsp4zr6b3ry4w
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_sensitivity_older_adults_s7
    Status:
    Failed
    Job identifier:
    xyftygl225h5fo57
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:07:17

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
disparities-comparison-rsv-flu-c19
Requested by
Em Prestige
Branch
main
Force run dependencies
No
Git commit hash
ce5e944
Requested actions
  • process_dataset_older_adults_s2_specific_secondary
  • describe_dataset_older_adults_s2_specific_secondary
  • process_dataset_older_adults_s3_specific_secondary
  • describe_dataset_older_adults_s3_specific_secondary
  • process_dataset_older_adults_s5_specific_secondary
  • describe_dataset_older_adults_s5_specific_secondary
  • process_dataset_adults_s2_specific_secondary
  • describe_dataset_adults_s2_specific_secondary
  • process_dataset_adults_s3_specific_secondary
  • describe_dataset_adults_s3_specific_secondary
  • process_dataset_adults_s5_specific_secondary
  • describe_dataset_adults_s5_specific_secondary
  • process_dataset_children_and_adolescents_s2_specific_secondary
  • describe_dataset_children_and_adolescents_s2_specific_secondary
  • process_dataset_children_and_adolescents_s3_specific_secondary
  • describe_dataset_children_and_adolescents_s3_specific_secondary
  • process_dataset_children_and_adolescents_s5_specific_secondary
  • describe_dataset_children_and_adolescents_s5_specific_secondary
  • process_dataset_infants_s2_specific_secondary
  • describe_dataset_infants_s2_specific_secondary
  • process_dataset_infants_s3_specific_secondary
  • describe_dataset_infants_s3_specific_secondary
  • process_dataset_infants_s5_specific_secondary
  • describe_dataset_infants_s5_specific_secondary
  • phenotype_sensitivity_older_adults_s1
  • phenotype_sensitivity_older_adults_s2
  • phenotype_sensitivity_older_adults_s3
  • phenotype_sensitivity_older_adults_s4
  • phenotype_sensitivity_older_adults_s5
  • phenotype_sensitivity_older_adults_s6
  • phenotype_sensitivity_older_adults_s7
  • phenotype_sensitivity_adults_s1
  • phenotype_sensitivity_adults_s2
  • phenotype_sensitivity_adults_s3
  • phenotype_sensitivity_adults_s4
  • phenotype_sensitivity_adults_s5
  • phenotype_sensitivity_adults_s6
  • phenotype_sensitivity_adults_s7
  • phenotype_sensitivity_children_and_adolescents_s1
  • phenotype_sensitivity_children_and_adolescents_s2
  • phenotype_sensitivity_children_and_adolescents_s3
  • phenotype_sensitivity_children_and_adolescents_s4
  • phenotype_sensitivity_children_and_adolescents_s5
  • phenotype_sensitivity_children_and_adolescents_s6
  • phenotype_sensitivity_children_and_adolescents_s7
  • phenotype_sensitivity_infants_s1
  • phenotype_sensitivity_infants_s2
  • phenotype_sensitivity_infants_s3
  • phenotype_sensitivity_infants_s4
  • phenotype_sensitivity_infants_s5
  • phenotype_sensitivity_infants_s6
  • phenotype_sensitivity_infants_s7
  • process_dataset_older_adults_s1_specific_sensitivity
  • describe_dataset_older_adults_s1_specific_sensitivity
  • collate_rates_tables_specific_secondary_older_adults
  • collate_rates_tables_specific_secondary_adults
  • collate_rates_tables_specific_secondary_children_and_adolescents
  • collate_rates_tables_specific_secondary_infants

Code comparison

Compare the code used in this job request