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Job request: 24977

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
disparities-comparison-rsv-flu-c19
ID:
wsjxesmbnetrcxkd
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Em Prestige requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset_adults_s2_sensitive_primary
    Status:
    Succeeded
    Job identifier:
    uyl3lqdsteashfot
  • Action:
    generate_dataset_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    ollbf454xcfm7sdn
    Status message:
    nonzero_exit: Job exited with an error
  • Action:
    collate_reinfections_tables_adults_sensitive
    Status:
    Failed
    Job identifier:
    arbdq5bptsvlatoa
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    plot_rolling_rates_older_adults
    Status:
    Failed
    Job identifier:
    fmcxswednte77s56
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    plot_upsets_older_adults
    Status:
    Failed
    Job identifier:
    ycca7qa32hy7oqvb
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_dataset_adults_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    jbuyivykylguvxt6
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_dataset_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    ugt3gaa6jrgmcwbv
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    reinfections_adults_s2_sensitive
    Status:
    Failed
    Job identifier:
    6g6ep6ae7tum3niw
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    reinfections_older_adults_s3_sensitive
    Status:
    Failed
    Job identifier:
    fryadn6tt2heizsu
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_sensitivity_older_adults_s3
    Status:
    Failed
    Job identifier:
    xutzik3lcwk556ww
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    plot_further_model_results_older_adults
    Status:
    Failed
    Job identifier:
    bo4toew5jlxlry5w
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    plot_rolling_rates_all_older_adults
    Status:
    Failed
    Job identifier:
    xueleuse3wnlvbur
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_further_flu_model_outputs_tables_adults
    Status:
    Failed
    Job identifier:
    zk5gwiqlmzprztkr
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    describe_dataset_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    pabd3atssssztka7
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    get_counts_adults_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    5ncm5utrm4s6kkzr
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    get_counts_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    mpptt7nteycc7vnv
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_rates_tables_rolling_primary_older_adults
    Status:
    Failed
    Job identifier:
    eycx6ci2khmbo3bo
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_reinfections_tables_older_adults_sensitive
    Status:
    Failed
    Job identifier:
    ut6ozrpfufly3bnu
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_rsv_model_outputs_tables_adults
    Status:
    Failed
    Job identifier:
    flsqujkktyhydzaa
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_rsv_model_outputs_tables_older_adults
    Status:
    Failed
    Job identifier:
    fatkfzqfdcirz3tc
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    describe_dataset_adults_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    xono3samw3zgojqp
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_counts_tables_rolling_primary_adults
    Status:
    Failed
    Job identifier:
    ko6wh3t4nfoex4e5
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    calculate_all_rates_over_time_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    5p6yo5bn7nkdngom
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    calculate_rates_rolling_adults_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    u4k6ehzloklnknmj
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    calculate_rates_rolling_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    fqk6qb3cpzrpbgdc
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_counts_tables_rolling_primary_older_adults
    Status:
    Failed
    Job identifier:
    6ldcyz7vylbajno2
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_further_overall_and_all_cause_model_outputs_tables_older_adults
    Status:
    Failed
    Job identifier:
    zsexnkzqlpzzdmop
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_further_rsv_model_outputs_tables_adults
    Status:
    Failed
    Job identifier:
    23arj5cmfzb7j6eu
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_further_rsv_model_outputs_tables_older_adults
    Status:
    Failed
    Job identifier:
    5wgkrsppmpvdlxun
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_rates_tables_primary_adults
    Status:
    Failed
    Job identifier:
    oel6efeudje2doyq
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_rates_tables_primary_older_adults
    Status:
    Failed
    Job identifier:
    pamppn4clj2tfrtz
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    analyse_dataset_adults_rsv_further_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    e3galnbbxkkhr5io
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    analyse_dataset_adults_rsv_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    gm75yuegnb326mxz
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    analyse_dataset_older_adults_flu_further_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    dzeoc7zzrz4ejz7d
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    analyse_dataset_older_adults_rsv_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    jj45343ja5voq2gn
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    calculate_all_rates_over_time_adults_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    2yzf2v6vxpyqbvix
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    analyse_dataset_adults_flu_further_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    hejwqlld5hag2ksc
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    analyse_dataset_adults_flu_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    25ssogkh3chn5q2x
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    analyse_dataset_adults_overall_and_all_cause_further_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    hd3fkho3udgiuqz7
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    analyse_dataset_adults_overall_and_all_cause_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    dgqfk2etfpbe2ufo
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    analyse_dataset_older_adults_flu_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    zllrevunr6sfacqd
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    analyse_dataset_older_adults_overall_and_all_cause_further_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    bqvkjavewbua2de3
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_overall_and_all_cause_model_outputs_tables_adults
    Status:
    Failed
    Job identifier:
    yhp5oiap7spkm4xj
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_overall_and_all_cause_model_outputs_tables_older_adults
    Status:
    Failed
    Job identifier:
    vy5sogeifprznrbo
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_phenotype_sensitivity_tables_adults
    Status:
    Failed
    Job identifier:
    mtwrk5a442ag5pqp
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_phenotype_sensitivity_tables_older_adults
    Status:
    Failed
    Job identifier:
    pvr6emravfqficne
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_rates_over_time_all_tables_primary_adults
    Status:
    Failed
    Job identifier:
    vrs77u633gb6koja
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_rates_over_time_all_tables_primary_older_adults
    Status:
    Failed
    Job identifier:
    6tjwsyzuttdj7o4j
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_rates_tables_rolling_primary_adults
    Status:
    Failed
    Job identifier:
    lebxe442vigxr424
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    phenotype_sensitivity_adults_s2
    Status:
    Failed
    Job identifier:
    s3rw7vveboiqdt7t
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    skim_dataset_adults_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    xjkvfexglzfg6oxx
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    skim_dataset_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    nxicctnfxs6rd7td
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    analyse_dataset_older_adults_overall_and_all_cause_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    lshyl6zfdznekr4b
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    analyse_dataset_older_adults_rsv_further_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    d7aizpreubfkcq2v
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_flu_model_outputs_tables_adults
    Status:
    Failed
    Job identifier:
    oizekpjovyuzwt7n
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_flu_model_outputs_tables_older_adults
    Status:
    Failed
    Job identifier:
    neghfmpb4wg52wwl
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    collate_further_flu_model_outputs_tables_older_adults
    Status:
    Failed
    Job identifier:
    ab4ihbe7bxjuyy75
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    skim_processed_dataset_adults_s2_sensitive_primary
    Status:
    Failed
    Job identifier:
    uhwpzlsz64gvge7q
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    collate_further_overall_and_all_cause_model_outputs_tables_adults
    Status:
    Failed
    Job identifier:
    tt6mafd3op5ouqzy
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    skim_processed_dataset_older_adults_s3_sensitive_primary
    Status:
    Failed
    Job identifier:
    k2t7y36vfjvhvry5
    Status message:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 1 1.7%
Failed 59 98.3%

60 / 60 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 05:11:50

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
disparities-comparison-rsv-flu-c19
Requested by
Em Prestige
Branch
main
Force run dependencies
No
Git commit hash
68ab975
Requested actions
  • run_all

Code comparison

Compare the code used in this job request