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Job request: 26599

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
disparities-comparison-rsv-flu-c19
ID:
4plr6ehaevctwknn
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Em Prestige requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    phenotype_testing_generate_dataset_older_adults_s8_alternative_additional_sensitivity
    Status:
    Failed
    Job identifier:
    gu3jdwmqxhbhifgd
    Status message:
    nonzero_exit: Job exited with an error: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    phenotype_testing_generate_dataset_older_adults_s8_second_alternative_additional_sensitivity
    Status:
    Failed
    Job identifier:
    pibaud3hyywpzmbc
    Status message:
    nonzero_exit: Job exited with an error: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    phenotype_testing_generate_dataset_adults_s8_alternative_additional_sensitivity
    Status:
    Failed
    Job identifier:
    mo6ndwmtzo4czghj
    Status message:
    nonzero_exit: Job exited with an error: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    phenotype_testing_generate_dataset_adults_s8_second_alternative_additional_sensitivity
    Status:
    Running
    Job identifier:
    dkm7znh26lse33kr
  • Action:
    phenotype_testing_generate_dataset_children_and_adolescents_s8_alternative_additional_sensitivity
    Status:
    Succeeded
    Job identifier:
    4qbpaxlqbyfcl22v
  • Action:
    phenotype_testing_generate_dataset_children_and_adolescents_s8_second_alternative_additional_sensitivity
    Status:
    Running
    Job identifier:
    yocvdjsurjagpd3j
  • Action:
    phenotype_testing_process_dataset_children_and_adolescents_s8_alternative_additional_sensitivity
    Status:
    Succeeded
    Job identifier:
    w2vavndwnpu5dnqp
  • Action:
    phenotype_testing_phenotype_sensitivity_children_and_adolescents_s8_alternative
    Status:
    Succeeded
    Job identifier:
    eawkhrz2cdm2g7hx
  • Action:
    phenotype_testing_reinfections_children_and_adolescents_s8_alternative
    Status:
    Succeeded
    Job identifier:
    rldb55j2m7tzmxfj
  • Action:
    phenotype_testing_process_dataset_children_and_adolescents_s8_second_alternative_additional_sensitivity
    Status:
    Pending
    Job identifier:
    6juqtt55o6hhwnv4
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_phenotype_sensitivity_children_and_adolescents_s8_second_alternative
    Status:
    Pending
    Job identifier:
    ootthr7irf3wfkoo
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_reinfections_children_and_adolescents_s8_second_alternative
    Status:
    Pending
    Job identifier:
    vr3236lk74d32jcc
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_reinfections_adults_s8_alternative
    Status:
    Failed
    Job identifier:
    pgfjlebse6t6lf4u
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_generate_dataset_infants_s8_second_alternative_additional_sensitivity
    Status:
    Pending
    Job identifier:
    ltm2cg7ijmkmaceo
    Status message:
    waiting_on_db_workers: Waiting on available database workers
  • Action:
    phenotype_testing_phenotype_sensitivity_adults_s8_alternative
    Status:
    Failed
    Job identifier:
    ytxgjqma7y4gy2uc
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_reinfections_adults_s8_second_alternative
    Status:
    Pending
    Job identifier:
    vih2sg3fyimfcj7r
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_process_dataset_older_adults_s8_second_alternative_additional_sensitivity
    Status:
    Failed
    Job identifier:
    45tc2ciq5gq64xiy
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_phenotype_sensitivity_adults_s8_second_alternative
    Status:
    Pending
    Job identifier:
    cqpsfjdn4vli24a5
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_process_dataset_older_adults_s8_alternative_additional_sensitivity
    Status:
    Failed
    Job identifier:
    kpbicdd2hf6nz3qw
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_phenotype_sensitivity_older_adults_s8_alternative
    Status:
    Failed
    Job identifier:
    kok2lhgsqb5qy42g
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_reinfections_older_adults_s8_second_alternative
    Status:
    Failed
    Job identifier:
    3aps3okizz5nyrzp
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_reinfections_older_adults_s8_alternative
    Status:
    Failed
    Job identifier:
    vfzhufousbxni6yu
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_phenotype_sensitivity_older_adults_s8_second_alternative
    Status:
    Failed
    Job identifier:
    r3zqg5o6hhrdyjyd
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    phenotype_testing_process_dataset_adults_s8_second_alternative_additional_sensitivity
    Status:
    Pending
    Job identifier:
    zj5hhg7ew7532ksa
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_process_dataset_infants_s8_second_alternative_additional_sensitivity
    Status:
    Pending
    Job identifier:
    cdggbuvexvb3zw3w
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_phenotype_sensitivity_infants_s8_second_alternative
    Status:
    Pending
    Job identifier:
    c3hgtccsorigzrjl
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_reinfections_infants_s8_second_alternative
    Status:
    Pending
    Job identifier:
    ufewesv2k75vedip
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_phenotype_sensitivity_infants_s8_alternative
    Status:
    Pending
    Job identifier:
    4n5ha4yspu47h245
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_reinfections_infants_s8_alternative
    Status:
    Pending
    Job identifier:
    2tp3wokjzt6oxidq
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_process_dataset_infants_s8_alternative_additional_sensitivity
    Status:
    Pending
    Job identifier:
    mv6gebtchjihb5bw
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    phenotype_testing_generate_dataset_infants_s8_alternative_additional_sensitivity
    Status:
    Pending
    Job identifier:
    jjet53tevjjltcia
    Status message:
    waiting_on_db_workers: Waiting on available database workers
  • Action:
    phenotype_testing_process_dataset_adults_s8_alternative_additional_sensitivity
    Status:
    Failed
    Job identifier:
    wrk726mfj2atxhef
    Status message:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Job statistics

Status Count Percentage
Pending 14 43.8%
Running 2 6.3%
Succeeded 4 12.5%
Failed 12 37.5%

16 / 32 (50%) complete

Timeline

  • Created:

  • Started:

  • Runtime: 03:20:10

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Running
Backend
TPP
Workspace
disparities-comparison-rsv-flu-c19
Requested by
Em Prestige
Branch
main
Force run dependencies
No
Git commit hash
602a38c
Requested actions
  • phenotype_testing_generate_dataset_older_adults_s8_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_older_adults_s8_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_older_adults_s8_alternative
  • phenotype_testing_reinfections_older_adults_s8_alternative
  • phenotype_testing_generate_dataset_older_adults_s8_second_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_older_adults_s8_second_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_older_adults_s8_second_alternative
  • phenotype_testing_reinfections_older_adults_s8_second_alternative
  • phenotype_testing_generate_dataset_adults_s8_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_adults_s8_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_adults_s8_alternative
  • phenotype_testing_reinfections_adults_s8_alternative
  • phenotype_testing_generate_dataset_adults_s8_second_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_adults_s8_second_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_adults_s8_second_alternative
  • phenotype_testing_reinfections_adults_s8_second_alternative
  • phenotype_testing_generate_dataset_children_and_adolescents_s8_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_children_and_adolescents_s8_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_children_and_adolescents_s8_alternative
  • phenotype_testing_reinfections_children_and_adolescents_s8_alternative
  • phenotype_testing_generate_dataset_children_and_adolescents_s8_second_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_children_and_adolescents_s8_second_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_children_and_adolescents_s8_second_alternative
  • phenotype_testing_reinfections_children_and_adolescents_s8_second_alternative
  • phenotype_testing_generate_dataset_infants_s8_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_infants_s8_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_infants_s8_alternative
  • phenotype_testing_reinfections_infants_s8_alternative
  • phenotype_testing_generate_dataset_infants_s8_second_alternative_additional_sensitivity
  • phenotype_testing_process_dataset_infants_s8_second_alternative_additional_sensitivity
  • phenotype_testing_phenotype_sensitivity_infants_s8_second_alternative
  • phenotype_testing_reinfections_infants_s8_second_alternative

Code comparison

Compare the code used in this job request