Job request: 11935
This page shows the technical details of what happened when authorised researcher Bang Zheng requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
various outputs were written to. Outputs marked as
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
can be requested for release to the public, via a controlled
output review service.
version: '3.0' expectations: population_size: 50000 actions: generate_study_population: run: cohortextractor:latest generate_cohort --study-definition study_definition outputs: highly_sensitive: cohort: output/input.csv data_preparation: run: stata-mp:latest analysis/data_preparation_and_descriptives.do needs: [generate_study_population] outputs: moderately_sensitive: log: logs/data_preparation.log highly_sensitive: data: output/main.dta cox_regression: run: stata-mp:latest analysis/cox.do needs: [data_preparation] outputs: moderately_sensitive: log: logs/cox.log figure1: output/phtest.svg figure2: output/phtest_psw.svg multiple_imputation: run: stata-mp:latest analysis/multiple_imputation.do needs: [data_preparation] outputs: moderately_sensitive: log: logs/MI.log data_preparation_molnupiravir: run: stata-mp:latest analysis/data_preparation_and_descriptives_molnupiravir.do needs: [generate_study_population] outputs: moderately_sensitive: log: logs/data_preparation_mol.log highly_sensitive: data: output/main_mol.dta cox_regression_molnupiravir: run: stata-mp:latest analysis/cox_molnupiravir.do needs: [data_preparation_molnupiravir] outputs: moderately_sensitive: log: logs/cox_mol.log figure1: output/mol/phtest.svg figure2: output/mol/phtest_psw.svg
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