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Job request: 10293

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
covid-collateral
ID:
qdaqtw67defres3d

This page shows the technical details of what happened when the authorised researcher Ruth Costello requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    cox_models_mi
    Status:
    Status: Failed
    Job identifier:
    7iyvwpb7dzas5esj
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_pre
    Status:
    Status: Failed
    Job identifier:
    6dqjk3a6awtnldrt
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_t2dm
    Status:
    Status: Failed
    Job identifier:
    gjzwp23fksn7m4c4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_easing1
    Status:
    Status: Failed
    Job identifier:
    lnwamshpp6dwflg4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_dm_keto
    Status:
    Status: Failed
    Job identifier:
    ydtjrvdd3xat3y7b
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_smi
    Status:
    Status: Failed
    Job identifier:
    v6nq3txhpohoj6rj
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_stroke
    Status:
    Status: Failed
    Job identifier:
    5ykiqrrkhlckcuto
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_vte
    Status:
    Status: Failed
    Job identifier:
    3e6hz7g4ufjla66i
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_resp
    Status:
    Status: Failed
    Job identifier:
    c5tzs4lyquyzsyjk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_easing2
    Status:
    Status: Failed
    Job identifier:
    vl62mutp3xlq7ivw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_easing3
    Status:
    Status: Failed
    Job identifier:
    ymtnydqau6rnemdk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_heart_failure
    Status:
    Status: Failed
    Job identifier:
    s73vnaqmcmt4hzjw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_mh
    Status:
    Status: Failed
    Job identifier:
    bybvzlpj2bqwx3cr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_t1dm
    Status:
    Status: Failed
    Job identifier:
    g22lzgkzlfumdtg7
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_static
    Status:
    Status: Failed
    Job identifier:
    r7p7knfwe63znnub
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    calculate_measures_resp
    Status:
    Status: Failed
    Job identifier:
    2nptzqjmwlk2iu37
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_copd
    Status:
    Status: Failed
    Job identifier:
    a5ehe5klnyhradom
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    calculate_measures_mh
    Status:
    Status: Failed
    Job identifier:
    oxjgwwdab3oltu7e
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_model_prep
    Status:
    Status: Failed
    Job identifier:
    jhe4sabf5jqo36gb
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_anx
    Status:
    Status: Failed
    Job identifier:
    v5r2hmhbhwx6o4vo
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_cvd
    Status:
    Status: Failed
    Job identifier:
    xy7bqchfxnxco6p2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_dm
    Status:
    Status: Failed
    Job identifier:
    6bec2c2tasvtat4l
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_mh
    Status:
    Status: Failed
    Job identifier:
    giynvehyaedwrovw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_wave2
    Status:
    Status: Failed
    Job identifier:
    xdkniqx7zlewbbam
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    graphs_dm
    Status:
    Status: Failed
    Job identifier:
    z4ynwp6jm2rdjypf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    graphs_mh_cvd
    Status:
    Status: Failed
    Job identifier:
    ckdxcy3ymukesiyw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    graphs_resp
    Status:
    Status: Failed
    Job identifier:
    3rdis4dwvulviq76
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    join_cohorts_mh
    Status:
    Status: Failed
    Job identifier:
    umemflclmxtygsll
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_data_check
    Status:
    Status: Failed
    Job identifier:
    l4pvtfrdciwtgvui
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    calculate_measures_dm
    Status:
    Status: Failed
    Job identifier:
    lqyrcwga6sawojqo
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_asthma
    Status:
    Status: Failed
    Job identifier:
    b3yrsykzyeisyytv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_depress
    Status:
    Status: Failed
    Job identifier:
    xokouiwzovinbuur
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_dm
    Status:
    Status: Failed
    Job identifier:
    ns2aliulgvegp2v6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_pandemic
    Status:
    Status: Failed
    Job identifier:
    sacgb5jvzdnr6u6g
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_wave1
    Status:
    Status: Failed
    Job identifier:
    5gidnartmrhyw7ef
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_survival_wave3
    Status:
    Status: Failed
    Job identifier:
    zfvffk2elgunfhvt
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
covid-collateral
Requested by
Ruth Costello
Branch
main
Force run dependencies
No
Git commit hash
00ed8f8
Requested actions
  • generate_study_population_static
  • generate_study_population_mh
  • join_cohorts_mh
  • generate_study_population_dm
  • generate_study_population_resp
  • calculate_measures_mh
  • calculate_measures_dm
  • calculate_measures_resp
  • graphs_mh_cvd
  • graphs_dm
  • graphs_resp
  • generate_study_population_survival_pre
  • generate_study_population_survival_pandemic
  • generate_study_population_survival_wave1
  • generate_study_population_survival_easing1
  • generate_study_population_survival_wave2
  • generate_study_population_survival_easing2
  • generate_study_population_survival_wave3
  • generate_study_population_survival_easing3
  • cox_model_prep
  • cox_data_check
  • cox_models_cvd
  • cox_models_mi
  • cox_models_stroke
  • cox_models_heart_failure
  • cox_models_vte
  • cox_models_t1dm
  • cox_models_t2dm
  • cox_models_dm_keto
  • cox_models_dm
  • cox_models_asthma
  • cox_models_copd
  • cox_models_depress
  • cox_models_anx
  • cox_models_smi
  • cox_models_mh

Code comparison

Compare the code used in this Job Request