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Job request: 9156

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
covid-collateral
ID:
2cpiuhmkezrjio53
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Ruth Costello requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_tables_2019
    Status:
    Succeeded
    Job identifier:
    vbekha2njomdfdj5
  • Action:
    generate_study_population_survival_pre
    Status:
    Succeeded
    Job identifier:
    5kokssfy4zjgmrtr
  • Action:
    generate_study_population_survival_pandemic
    Status:
    Succeeded
    Job identifier:
    xovawog55kn3ch3q
  • Action:
    generate_study_population_tables_2021
    Status:
    Succeeded
    Job identifier:
    oabu5neeyxlmhp73
  • Action:
    generate_study_population_tables_2020
    Status:
    Succeeded
    Job identifier:
    xidyoa3l4abvassf
  • Action:
    generate_study_population_mortality
    Status:
    Succeeded
    Job identifier:
    rwucyxzf7t2dpb3j
  • Action:
    generate_study_population
    Status:
    Succeeded
    Job identifier:
    26l2deejoyvpeb2v
  • Action:
    cox_models
    Status:
    Succeeded
    Job identifier:
    qaky6mvqhcm2fnqt
  • Action:
    create_baseline_tables
    Status:
    Succeeded
    Job identifier:
    oqznuokn22a7l6zu
  • Action:
    join_cohorts_cvd
    Status:
    Succeeded
    Job identifier:
    x2uqid47ha4ie7cf
  • Action:
    calculate_measures
    Status:
    Succeeded
    Job identifier:
    k62aay722pox23jm
  • Action:
    graphs_mh_cvd
    Status:
    Failed
    Job identifier:
    ydg33axalqwcpmhi
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    model_checks_cvd
    Status:
    Succeeded
    Job identifier:
    v6tafsn2tprdgdtg
  • Action:
    time_series_cvd
    Status:
    Succeeded
    Job identifier:
    v4cresujimzwksut
  • Action:
    calculate_measures_mortality
    Status:
    Succeeded
    Job identifier:
    r6ug4rad5mpzt6wq
  • Action:
    time_series_mortality
    Status:
    Failed
    Job identifier:
    kvyq7ddfka6g3v4u
    Error:
    No outputs found matching patterns: - output/time_series/tsreg_tables_mortality*.csv
  • Action:
    graphs_mortality
    Status:
    Succeeded
    Job identifier:
    woysk7kva64owtqm
  • Action:
    model_checks_mortality
    Status:
    Succeeded
    Job identifier:
    by3t5yztyrv22ims

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 155:04:26

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
covid-collateral
Requested by
Ruth Costello
Branch
main
Force run dependencies
No
Git commit hash
c407b91
Requested actions
  • generate_study_population
  • join_cohorts_cvd
  • generate_study_population_mortality
  • generate_study_population_tables_2019
  • generate_study_population_tables_2020
  • generate_study_population_tables_2021
  • create_baseline_tables
  • calculate_measures
  • calculate_measures_mortality
  • graphs_mh_cvd
  • graphs_mortality
  • model_checks_cvd
  • model_checks_mortality
  • time_series_cvd
  • time_series_mortality
  • generate_study_population_survival_pre
  • generate_study_population_survival_pandemic
  • cox_models

Code comparison

Compare the code used in this job request