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Job request: 10012

Organisation:
Bennett Institute
Workspace:
covid_mortality_over_time
ID:
evbueuxpgcunj2d2

This page shows the technical details of what happened when the authorised researcher Linda Nab requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_study_population_wave2
    Status:
    Status: Failed
    Job identifier:
    c6uf6zfgwizg7xqh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_wave3
    Status:
    Status: Failed
    Job identifier:
    7pfd2gaxm4ii2rag
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_wave1
    Status:
    Status: Failed
    Job identifier:
    qt5du3oizabwo6vk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_ethnicity
    Status:
    Status: Failed
    Job identifier:
    kkl6day6qcoavslq
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_flowchart
    Status:
    Status: Failed
    Job identifier:
    ljam3t7hnrhr47gp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    create_table_two
    Status:
    Status: Failed
    Job identifier:
    dn7zfno6tggchm3s
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    skim_data_wave2
    Status:
    Status: Failed
    Job identifier:
    7att4feddvv3iomi
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    tidy_absrisks_for_viz
    Status:
    Status: Failed
    Job identifier:
    isj6ff6avcqknzo5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    tidy_relrisks_for_viz
    Status:
    Status: Failed
    Job identifier:
    pwzczip2rw4bw45d
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_data_flowchart
    Status:
    Status: Failed
    Job identifier:
    6vbrykpyi2zpjlb5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    skim_data_flowchart
    Status:
    Status: Failed
    Job identifier:
    h72k5z5nt2ef7spm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_numbers_flowchart
    Status:
    Status: Failed
    Job identifier:
    assimepeeslx626c
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    join_cohorts_waves
    Status:
    Status: Failed
    Job identifier:
    sp47rcworqcaywjy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_cox_ph
    Status:
    Status: Failed
    Job identifier:
    uizo6pqwbsrhow6r
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_data
    Status:
    Status: Failed
    Job identifier:
    7ewnlldqrossscdj
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    skim_data_wave1
    Status:
    Status: Failed
    Job identifier:
    fhao6wggpjw2wyha
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_irs
    Status:
    Status: Failed
    Job identifier:
    ne6zhhbahjkvpc6y
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    skim_data_wave3
    Status:
    Status: Failed
    Job identifier:
    t6j5ugpop7hmypsi
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_irs_std
    Status:
    Status: Failed
    Job identifier:
    7l4qhbf4bsiwlsv7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_vax_cov
    Status:
    Status: Failed
    Job identifier:
    2il2jhcidyxcrgbb
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    create_kaplan_meier
    Status:
    Status: Failed
    Job identifier:
    wetjr33g5ei62i5r
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    create_table_one
    Status:
    Status: Failed
    Job identifier:
    qpuobchlhpvno3ws
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:26:51

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Requested by
Linda Nab
Branch
main
Force run dependencies
No
Git commit hash
308d854
Requested actions
  • generate_study_population_ethnicity
  • generate_study_population_flowchart
  • process_data_flowchart
  • skim_data_flowchart
  • calc_numbers_flowchart
  • generate_study_population_wave1
  • generate_study_population_wave2
  • generate_study_population_wave3
  • join_cohorts_waves
  • process_data
  • skim_data_wave1
  • skim_data_wave2
  • skim_data_wave3
  • calc_vax_cov
  • calc_irs
  • create_table_one
  • calc_irs_std
  • create_kaplan_meier
  • model_cox_ph
  • create_table_two
  • tidy_absrisks_for_viz
  • tidy_relrisks_for_viz

Code comparison

Compare the code used in this Job Request