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Job request: 12967

Organisation:
Bennett Institute
Workspace:
covid_mortality_over_time
ID:
dvsufmdpb2vw7qcn

This page shows the technical details of what happened when the authorised researcher Linda Nab requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_study_population_flowchart5
    Status:
    Status: Succeeded
    Job identifier:
    vh6gfbrvgirjqjyd
  • Action:
    generate_study_population_flowchart4
    Status:
    Status: Succeeded
    Job identifier:
    2ndvsf2n2jtoaacm
  • Action:
    process_data_flowchart
    Status:
    Status: Succeeded
    Job identifier:
    h5y4wegxsjpboraj
  • Action:
    calc_numbers_flowchart_wave5
    Status:
    Status: Succeeded
    Job identifier:
    clivhzqygjj2vufz
  • Action:
    calc_numbers_flowchart_wave4
    Status:
    Status: Succeeded
    Job identifier:
    skwynw7dyiusrkya
  • Action:
    generate_study_population_wave5
    Status:
    Status: Succeeded
    Job identifier:
    jrhthzdwbb5sbkuq
  • Action:
    generate_study_population_wave4
    Status:
    Status: Failed
    Job identifier:
    6dbbxfyrfzayi23u
    Error:
    nonzero_exit: Job exited with error code 3: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    process_data
    Status:
    Status: Failed
    Job identifier:
    c7265gcjg42fxagh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_cox_ph_wave5
    Status:
    Status: Failed
    Job identifier:
    qqhyegyt26lxow7a
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    tidy_absrisks_for_viz
    Status:
    Status: Failed
    Job identifier:
    egjv6wuntfofpunt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_irs
    Status:
    Status: Failed
    Job identifier:
    ozjxtpft4tshtsek
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    skim_data_wave4
    Status:
    Status: Failed
    Job identifier:
    judrihv5kigjfhuf
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    skim_data_wave5
    Status:
    Status: Failed
    Job identifier:
    dyajzo2fwqtgo4ys
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    model_cox_ph_wave4
    Status:
    Status: Failed
    Job identifier:
    t7aidgrib4e7zddy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    create_table_A1
    Status:
    Status: Failed
    Job identifier:
    kpjwpvllhn43hys7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    join_cohorts_waves
    Status:
    Status: Failed
    Job identifier:
    2w5r2ufpk2nx3x5l
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    tidy_relrisks_for_viz
    Status:
    Status: Failed
    Job identifier:
    7nboqmqogm5jv77n
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_irs_std
    Status:
    Status: Failed
    Job identifier:
    rzv7wvipxw5i5vgi
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_missings
    Status:
    Status: Failed
    Job identifier:
    i3avglknbwv3cr3s
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    calc_vax_cov
    Status:
    Status: Failed
    Job identifier:
    sv25ovwvmzricvy4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    create_kaplan_meier
    Status:
    Status: Failed
    Job identifier:
    bg35v7nbgrsvr35r
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    create_table_one
    Status:
    Status: Failed
    Job identifier:
    yvzwxwuu6bjrfndv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    create_table_two
    Status:
    Status: Failed
    Job identifier:
    xavrdzpp7ic7x2lu
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 53:17:19

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Requested by
Linda Nab
Branch
main
Force run dependencies
No
Git commit hash
b1444f1
Requested actions
  • generate_study_population_flowchart4
  • generate_study_population_flowchart5
  • process_data_flowchart
  • calc_numbers_flowchart_wave4
  • calc_numbers_flowchart_wave5
  • generate_study_population_wave4
  • generate_study_population_wave5
  • join_cohorts_waves
  • process_data
  • skim_data_wave4
  • skim_data_wave5
  • calc_missings
  • calc_vax_cov
  • calc_irs
  • create_table_one
  • calc_irs_std
  • create_table_A1
  • create_kaplan_meier
  • model_cox_ph_wave4
  • model_cox_ph_wave5
  • create_table_two
  • tidy_absrisks_for_viz
  • tidy_relrisks_for_viz

Code comparison

Compare the code used in this Job Request