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Job request: 1926

Organisation:
Bennett Institute
Workspace:
covid-vaccine-effectiveness-research_main
ID:
zivcpeiasyygrndc

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    data_process_all
    Status:
    Status: Succeeded
    Job identifier:
    4qup4kquznbc5xb3
  • Action:
    data_define_cohorts
    Status:
    Status: Succeeded
    Job identifier:
    qsccn2qzb5lszrzd
  • Action:
    data_properties_all
    Status:
    Status: Succeeded
    Job identifier:
    egjdb36su6om2raa
  • Action:
    data_stset_over80s
    Status:
    Status: Succeeded
    Job identifier:
    js3lqp7nczhltzr7
  • Action:
    descr_events_over80s
    Status:
    Status: Failed
    Job identifier:
    5u2mm2k4l5azdsal
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    data_properties_over80s_tte
    Status:
    Status: Succeeded
    Job identifier:
    lantw7jkply7juzl
  • Action:
    descr_table1_over80s
    Status:
    Status: Failed
    Job identifier:
    wradm2bkcnlgx6h7
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    data_properties_over80s_fixed
    Status:
    Status: Succeeded
    Job identifier:
    mgwstpisqvjqkzxq
  • Action:
    models_over80s_coviddeath_any_all
    Status:
    Status: Failed
    Job identifier:
    lblnbtau6erxatrw
    Error:
    No outputs found matching patterns: - output/over80s/coviddeath/any/all/*/model*.rds - output/over80s/coviddeath/any/all/*/data*.rds - output/over80s/coviddeath/any/all/*/weights*
  • Action:
    models_over80s_death_any_all
    Status:
    Status: Failed
    Job identifier:
    mjflpzaszylpe5ew
    Error:
    No outputs found matching patterns: - output/over80s/death/any/all/*/model*.rds - output/over80s/death/any/all/*/data*.rds - output/over80s/death/any/all/*/weights*
  • Action:
    models_over80s_noncoviddeath_any_all
    Status:
    Status: Failed
    Job identifier:
    orartojcvctdr5hy
    Error:
    No outputs found matching patterns: - output/over80s/noncoviddeath/any/all/*/model*.rds - output/over80s/noncoviddeath/any/all/*/data*.rds - output/over80s/noncoviddeath/any/all/*/weights*
  • Action:
    models_over80s_postest_any_all
    Status:
    Status: Failed
    Job identifier:
    44rtd54adnx552tf
    Error:
    No outputs found matching patterns: - output/over80s/postest/any/all/*/model*.rds - output/over80s/postest/any/all/*/data*.rds - output/over80s/postest/any/all/*/weights*
  • Action:
    models_over80s_covidadmitted_any_all
    Status:
    Status: Failed
    Job identifier:
    wqzsc3qltr6mzpeg
    Error:
    No outputs found matching patterns: - output/over80s/covidadmitted/any/all/*/model*.rds - output/over80s/covidadmitted/any/all/*/data*.rds - output/over80s/covidadmitted/any/all/*/weights*
  • Action:
    report_ipw_over80s_any_all
    Status:
    Status: Failed
    Job identifier:
    ubt3dj6wlud6dsgt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_ipw_over80s_postest_any_all
    Status:
    Status: Failed
    Job identifier:
    5ln4kfq6hlltl343
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_over80s_postest_any_all
    Status:
    Status: Failed
    Job identifier:
    ppbnbapukrv7cqna
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_ipw_over80s_covidadmitted_any_all
    Status:
    Status: Failed
    Job identifier:
    ch6lnfojbk2yixoe
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_over80s_covidadmitted_any_all
    Status:
    Status: Failed
    Job identifier:
    jkz6a4337cvnuh2p
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_ipw_over80s_noncoviddeath_any_all
    Status:
    Status: Failed
    Job identifier:
    wmg2dyo7cu2epcpm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_over80s_noncoviddeath_any_all
    Status:
    Status: Failed
    Job identifier:
    kl2sgxthj45g664k
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_ipw_over80s_coviddeath_any_all
    Status:
    Status: Failed
    Job identifier:
    je7u74kvyhc5ucyt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_over80s_coviddeath_any_all
    Status:
    Status: Failed
    Job identifier:
    nz2vbv2o3oozgpna
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_ipw_over80s_death_any_all
    Status:
    Status: Failed
    Job identifier:
    tzq7sljn7qo44al2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_over80s_death_any_all
    Status:
    Status: Failed
    Job identifier:
    kjzlkzk5tqsaeqnm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    report_over80s_any_all
    Status:
    Status: Failed
    Job identifier:
    jdxnziwbjivnr3td
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 26:16:35

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
c23438e
Requested actions
  • data_process_all
  • data_properties_all
  • data_define_cohorts
  • data_stset_over80s
  • data_properties_over80s_fixed
  • data_properties_over80s_tte
  • descr_table1_over80s
  • descr_events_over80s
  • models_over80s_postest_any_all
  • report_ipw_over80s_postest_any_all
  • report_over80s_postest_any_all
  • models_over80s_covidadmitted_any_all
  • report_ipw_over80s_covidadmitted_any_all
  • report_over80s_covidadmitted_any_all
  • models_over80s_noncoviddeath_any_all
  • report_ipw_over80s_noncoviddeath_any_all
  • report_over80s_noncoviddeath_any_all
  • models_over80s_coviddeath_any_all
  • report_ipw_over80s_coviddeath_any_all
  • report_over80s_coviddeath_any_all
  • models_over80s_death_any_all
  • report_ipw_over80s_death_any_all
  • report_over80s_death_any_all
  • report_over80s_any_all
  • report_ipw_over80s_any_all

Code comparison

Compare the code used in this Job Request