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Job request: 12276

Organisation:
Bennett Institute
Workspace:
covid-vaccine-effectiveness-seqtrial-main
ID:
zm57hyep4lklqzut
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    design
    Status:
    Succeeded
    Job identifier:
    nr6fgd6d4lvtcpvc
  • Action:
    extract_treated
    Status:
    Succeeded
    Job identifier:
    ksh4egdactxazugr
  • Action:
    extract_controlpotential_az_1
    Status:
    Succeeded
    Job identifier:
    q4cbmfey2knxsls2
  • Action:
    extract_controlpotential_pfizer_1
    Status:
    Succeeded
    Job identifier:
    oeeev74uhmjj4xv3
  • Action:
    process_treated
    Status:
    Succeeded
    Job identifier:
    d233uf3g7jtyaasa
  • Action:
    process_controlpotential_az_1
    Status:
    Succeeded
    Job identifier:
    xzfgywm3hg7pfi6h
  • Action:
    match_potential_az_1
    Status:
    Failed
    Job identifier:
    md7psdzykcikixdc
    Status message:
    nonzero_exit: Job exited with error code 1
  • Action:
    process_controlpotential_pfizer_1
    Status:
    Succeeded
    Job identifier:
    kp3uh6xovrkpovii
  • Action:
    match_potential_pfizer_1
    Status:
    Succeeded
    Job identifier:
    eqwtnc4745ykvybl
  • Action:
    extract_controlactual_pfizer_1
    Status:
    Succeeded
    Job identifier:
    dqksf623klnngtld
  • Action:
    process_controlactual_pfizer_1
    Status:
    Failed
    Job identifier:
    tdksazlztvymtl5o
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlactual_pfizer_2
    Status:
    Failed
    Job identifier:
    6qoytmxyounqfkyf
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_all_emergency
    Status:
    Failed
    Job identifier:
    qc6673qonmdtp2q7
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_all_covidemergency
    Status:
    Failed
    Job identifier:
    ak3yv4d62dobbqod
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_all_covidadmitted
    Status:
    Failed
    Job identifier:
    nhevoujxktdqrj2z
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_all_covidcritcare
    Status:
    Failed
    Job identifier:
    a6ewjm6frn25be3g
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_all_coviddeath
    Status:
    Failed
    Job identifier:
    vjonpgpbxk3sra7s
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_all_noncoviddeath
    Status:
    Failed
    Job identifier:
    7346rts57x3bqq5h
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_ageband2_postest
    Status:
    Failed
    Job identifier:
    f2wszt5bmcnuxkgv
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_ageband2_covidemergency
    Status:
    Failed
    Job identifier:
    twsdmfogqm2qqc7b
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlactual_az_3
    Status:
    Failed
    Job identifier:
    yt4pabwvywb2dsrn
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlpotential_az_4
    Status:
    Failed
    Job identifier:
    e37vomdpifjudlho
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    match_potential_az_4
    Status:
    Failed
    Job identifier:
    2fdtrxvouzqlm4px
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlactual_az_4
    Status:
    Failed
    Job identifier:
    3rtstjvw3zspcbf6
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlfinal_az
    Status:
    Failed
    Job identifier:
    nnkmvv4ushdjz7bt
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    dummydata_controlfinal_az
    Status:
    Failed
    Job identifier:
    km4nt2ua6dhoqllq
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlfinal_az
    Status:
    Failed
    Job identifier:
    thvthdlzy27cwdkd
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    match_potential_pfizer_4
    Status:
    Failed
    Job identifier:
    giowuzomzcfk2fex
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_ageband2_covidadmitted
    Status:
    Failed
    Job identifier:
    iwvwklmqdc23u4aw
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_ageband2_covidcritcare
    Status:
    Failed
    Job identifier:
    xsip43rlvhtj5xij
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_ageband2_coviddeath
    Status:
    Failed
    Job identifier:
    mo4i5l4fb7kde7hq
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    extract_controlactual_az_1
    Status:
    Failed
    Job identifier:
    ih4zeboqlyq2cfbc
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_all_coviddeath
    Status:
    Failed
    Job identifier:
    aqojgvpaugrrurui
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_all_noncoviddeath
    Status:
    Failed
    Job identifier:
    wuleuuk6bi3vwywp
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_ageband2_emergency
    Status:
    Failed
    Job identifier:
    jmmseknipvozwnpk
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_ageband2_covidemergency
    Status:
    Failed
    Job identifier:
    a2lkariupho7a7iy
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    match_potential_az_2
    Status:
    Failed
    Job identifier:
    55merv7umlquu4qb
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_ageband2_covidadmitted
    Status:
    Failed
    Job identifier:
    crmhqtwpcz6zova7
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlactual_az_2
    Status:
    Failed
    Job identifier:
    7dn6n4odtqu7t6lk
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlpotential_az_3
    Status:
    Failed
    Job identifier:
    tfum7yxj4vwcqobo
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    match_potential_az_3
    Status:
    Failed
    Job identifier:
    a72357s7r77djafa
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlactual_az_3
    Status:
    Failed
    Job identifier:
    j3gr7247nikjtm3t
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    table1_az
    Status:
    Failed
    Job identifier:
    5eoqyda3lnsuuzrw
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_all_emergency
    Status:
    Failed
    Job identifier:
    cvwnzunekdy2lfks
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_all_covidemergency
    Status:
    Failed
    Job identifier:
    4iomiy4cclnfv6c5
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_all_covidadmitted
    Status:
    Failed
    Job identifier:
    xa66uspdthxmjnqg
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlpotential_pfizer_2
    Status:
    Failed
    Job identifier:
    p2axn4fmezmj32wt
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    extract_controlactual_pfizer_2
    Status:
    Failed
    Job identifier:
    envbm3plj75coh4i
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    extract_controlpotential_pfizer_3
    Status:
    Failed
    Job identifier:
    i5kznoaykiedwyh4
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    extract_controlpotential_pfizer_4
    Status:
    Failed
    Job identifier:
    2yzwhkibobl5dbzz
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlpotential_pfizer_4
    Status:
    Failed
    Job identifier:
    4ztecyjehuq6zpcb
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    extract_controlfinal_pfizer
    Status:
    Failed
    Job identifier:
    dr2zi3qp2fkbu6zy
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_all_postest
    Status:
    Failed
    Job identifier:
    xqyquhdnbcagp2jo
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_ageband2_emergency
    Status:
    Failed
    Job identifier:
    5rjv5vqdbyar35cs
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_pfizer_ageband2_noncoviddeath
    Status:
    Failed
    Job identifier:
    fmg3yajjb7xfbiuj
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlactual_az_1
    Status:
    Failed
    Job identifier:
    6jzoytpxyti2tdj5
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlpotential_az_2
    Status:
    Failed
    Job identifier:
    22kzclbky4kkh7h3
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlpotential_az_2
    Status:
    Failed
    Job identifier:
    rhkjj4mm66cyu43d
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlactual_az_2
    Status:
    Failed
    Job identifier:
    3jzyszswnvzqwfqs
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlpotential_az_3
    Status:
    Failed
    Job identifier:
    tqhr6u3w5bzxtk43
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlpotential_az_4
    Status:
    Failed
    Job identifier:
    bh5fbn6sjab576om
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlactual_az_4
    Status:
    Failed
    Job identifier:
    v5tnagunwlouodft
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_all_postest
    Status:
    Failed
    Job identifier:
    5j73vbwsmgaw2muw
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_all_covidcritcare
    Status:
    Failed
    Job identifier:
    4zb45mc3gukj64cm
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_ageband2_postest
    Status:
    Failed
    Job identifier:
    bxg4w3r7aay4hgi6
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_ageband2_covidcritcare
    Status:
    Failed
    Job identifier:
    pf6ch7ceaoysftwa
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_az_ageband2_coviddeath
    Status:
    Failed
    Job identifier:
    asck3drwgkyatwln
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlactual_pfizer_4
    Status:
    Failed
    Job identifier:
    keskvsy4kfr42dwj
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    km_az_ageband2_noncoviddeath
    Status:
    Failed
    Job identifier:
    mq7bhz4muqpq3n5x
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlactual_pfizer_4
    Status:
    Failed
    Job identifier:
    rwtqe3mtvfowu7s6
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    dummydata_controlfinal_pfizer
    Status:
    Failed
    Job identifier:
    mpio7s73lc53trne
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlfinal_pfizer
    Status:
    Failed
    Job identifier:
    zijbfqcqosncsgmd
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    table1_pfizer
    Status:
    Failed
    Job identifier:
    wqxfyij6hkfqr365
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlpotential_pfizer_3
    Status:
    Failed
    Job identifier:
    jpxzqak2nhlnnmcf
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    match_potential_pfizer_3
    Status:
    Failed
    Job identifier:
    iuba46stzclouvfo
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    extract_controlactual_pfizer_3
    Status:
    Failed
    Job identifier:
    3mrr476wzz6m2xgn
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlactual_pfizer_3
    Status:
    Failed
    Job identifier:
    wxtuovpbbiy5sfzo
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    process_controlpotential_pfizer_2
    Status:
    Failed
    Job identifier:
    t7z2javbp4jecjxj
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    match_potential_pfizer_2
    Status:
    Failed
    Job identifier:
    jjz4x34lh7jwczlk
    Status message:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml
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Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 9 11.4%
Failed 70 88.6%

79 / 79 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 14:05:54

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
covid-vaccine-effectiveness-seqtrial-main
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
a4800a8
Requested actions
  • table1_pfizer
  • km_pfizer_all_postest
  • km_pfizer_all_emergency
  • km_pfizer_all_covidemergency
  • km_pfizer_all_covidadmitted
  • km_pfizer_all_covidcritcare
  • km_pfizer_all_coviddeath
  • km_pfizer_all_noncoviddeath
  • km_pfizer_ageband2_postest
  • km_pfizer_ageband2_emergency
  • km_pfizer_ageband2_covidemergency
  • km_pfizer_ageband2_covidadmitted
  • km_pfizer_ageband2_covidcritcare
  • km_pfizer_ageband2_coviddeath
  • km_pfizer_ageband2_noncoviddeath
  • table1_az
  • km_az_all_postest
  • km_az_all_emergency
  • km_az_all_covidemergency
  • km_az_all_covidadmitted
  • km_az_all_covidcritcare
  • km_az_all_coviddeath
  • km_az_all_noncoviddeath
  • km_az_ageband2_postest
  • km_az_ageband2_emergency
  • km_az_ageband2_covidemergency
  • km_az_ageband2_covidadmitted
  • km_az_ageband2_covidcritcare
  • km_az_ageband2_coviddeath
  • km_az_ageband2_noncoviddeath

Code comparison

Compare the code used in this job request

  • No previous job request available for comparison