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Job request: 4318

Organisation:
Bennett Institute
Workspace:
covid-ve-change-over-time--explore-2nd-vax-dates
ID:
cp42l4274ent3yca
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Elsie Horne requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    design
    Status:
    Status: Succeeded
    Job identifier:
    b3xjd2rbzml3jiwt
  • Action:
    generate_study_population
    Status:
    Status: Succeeded
    Job identifier:
    7gbxtlrbf2xokpzd
  • Action:
    eda_2nd_vax_dates
    Status:
    Status: Failed
    Job identifier:
    g6a5vedfkahjp6um
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  design:
    run: r:latest analysis/design.R
    outputs:
      highly_sensitive:
        study_dates_json: analysis/lib/study_dates.json
        study_dates_rds: analysis/lib/study_dates.rds
        jcvi_groups: analysis/lib/jcvi_groups.csv
        elig_dates: analysis/lib/elig_dates.csv

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    needs: 
    - design
    outputs:
      highly_sensitive:
        cohort: output/input.csv
        
  eda_2nd_vax_dates:
    run: r:latest analysis/explore_2nd_vax_dates.R
    needs:
    - design
    - generate_study_population
    outputs:
      moderately_sensitive:
        plots_eda_2nd_vax_dates: output/images/second_vax_dates_*.png

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 28:35:56

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
covid-ve-change-over-time--explore-2nd-vax-dates
Requested by
Elsie Horne
Branch
main
Force run dependencies
Yes
Git commit hash
2264be2
Requested actions
  • run_all

Code comparison

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