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Job request: 375

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
covid-vs-non-covid-deaths-research
ID:
dzhqd6l355wxbvl6
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Krishnan Bhaskaran requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohort2019
    Status:
    Status: Failed
    Job identifier:
    ovmqxol2k3octuis
    Error:
    ProjectYAMLError: DuplicateKeyError while constructing a mapping in "project.yaml", line 7, column 3: generate_cohortMAIN: ^ (line: 7) found duplicate key "imp_modelMAIN_C_SAu071only" with value "{}" (original value: "{}") in "project.yaml", line 325, column 3: imp_modelMAIN_C_SAu071only: ^ (line: 325)

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
covid-vs-non-covid-deaths-research
Requested by
Krishnan Bhaskaran
Branch
master
Force run dependencies
No
Git commit hash
78ea61d
Requested actions
  • generate_cohort2019
  • crMAIN
  • crSEPT2020
  • cr2019
  • imputedataMAIN
  • imputedataSEPT2020
  • imputedata2019
  • descriptive_table1
  • absoluterisksbycause
  • agesexmodelsMAIN
  • agesexmodelsSEPT2020
  • agesexmodels2019
  • agesexmodelsSA_anyonDC
  • agesexmodelsSA_u071only
  • fullmodelsMAIN
  • fullmodelsSEPT2020
  • fullmodels2019
  • ethnicity_model_and_graph
  • deathsonly_models

Code comparison

Compare the code used in this job request