Job request: 6259
This page shows the technical details of what happened when authorised researcher Helen Curtis requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
various outputs were written to. Outputs marked as
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
can be requested for release to the public, via a controlled
output review service.
- Status: Succeeded
- Job identifier:
version: '3.0' expectations: population_size: 1000 actions: generate_population: run: cohortextractor:latest generate_cohort --study-definition study_definition --output-format 'feather' outputs: highly_sensitive: cohort: output/input.feather generate_report: run: cohort-report:v3.0.0 output/input.feather needs: [generate_population] config: output_path: output/cohort_reports_outputs outputs: moderately_sensitive: reports: output/cohort_reports_outputs/descriptives_input.html # note not possible to execute and save notebook in a single action with `--execute --to notebook` because of self-dependency # still possible to execute and save to html or md file summary_html: run: jupyter:latest jupyter nbconvert /workspace/notebooks/data_summary.ipynb --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400 needs: [generate_population] outputs: moderately_sensitive: html: output/data_summary.html
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