Job request: 4079
- Organisation:
- University of Manchester
- Workspace:
- amr-uom-brit-main
- ID:
- sqm3ggt6g4dyor53
This page shows the technical details of what happened when authorised researcher ali requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
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- Job identifier:
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hdmtcr3yk2vxjhei
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- Job identifier:
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wseovqltxffi3wkg
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- Job identifier:
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proqvit334wnkxxo
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- Job identifier:
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l7ntuhx4fke76nce
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- Job identifier:
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fe7ekxhwed5epg2a
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- Job identifier:
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zlctymguk2ffmj6y
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- Job identifier:
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aauepuicsyf76q6g
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2019-01-01 to today by month" --skip-existing --output-dir=output/measures --output-format=csv.gz
outputs:
highly_sensitive:
cohort: output/measures/input_*.csv.gz
generate_measures:
run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
needs: [generate_study_population]
outputs:
moderately_sensitive:
measure_csv: output/measures/measure_*.csv
describe:
run: r:latest analysis/plot/overall_ab_prescribing.R
needs: [generate_measures]
outputs:
moderately_sensitive:
cohort: output/overall.png
boxplot: output/overallbox.png
describe_percentile:
run: r:latest analysis/plot/overall_ab_prescribing_2575percentile.R
needs: [generate_measures]
outputs:
moderately_sensitive:
percentile: output/overall_25th_75th_percentile.png
describe_starpu:
run: r:latest analysis/plot/starpu_ab_prescribing.R
needs: [generate_measures]
outputs:
moderately_sensitive:
cohort: output/starpuline.png
boxplot: output/starpubox.png
describe_infection_event:
run: r:latest analysis/plot/infection_event_2575percentile.R
needs: [generate_measures]
outputs:
moderately_sensitive:
percentile1: output/uti_event_25th_75th_percentile.png
percentile2: output/lrti_event_25th_75th_percentile.png
describe_infection_ab:
run: r:latest analysis/plot/infection_ab_boxplot.R
needs: [generate_study_population]
outputs:
moderately_sensitive:
boxplot1: output/uti_prescribing_rate_box.png
boxplot2: output/lrti_prescribing_rate_box.png
Timeline
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Created:
-
Started:
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Finished:
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Runtime: 91:42:03
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- amr-uom-brit-main
- Requested by
- ali
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 40bab54
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request