Job request: 8428

View Repo View project.yaml

This page shows the technical details of what happened when authorised researcher Will Hulme requested one or more actions to be run against real patient data in the COVID-19 Vaccine Effectiveness project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

ID Status Action
42dw2ptgwzzgb4wy failed combine_model_age65plus
pmb4ig6wz3zfxed6 failed combine_model_cev
ny74yrw3vtn7faqo failed combine_model_none
uajpoj2deo3pla22 failed combine_model_prior_covid_infection
xl24cikjhy63ahzn failed combine_model_vax12_type
jdoukrcfr743vrdn succeeded model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
mfid5fi3mm5lktgr succeeded model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
y5ot2li6ml6rntpb succeeded model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
zybgttmvnhgd72p3 succeeded model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
epvthbbjrssfhkdl succeeded model_seqtrialcox_moderna_covidcc_age65plus-FALSE
og3q3b2os2lrtmok succeeded model_seqtrialcox_moderna_covidcc_age65plus-TRUE
l2ncrbjkkjgzw2un succeeded model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
tc5fnzw77wr5s75j succeeded model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
seaq5ib3lwehbvif succeeded model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
ot3d5ymcczyldcgm succeeded model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
pcc63sna65aba6ce succeeded model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
6mjhlayw7tmeux2k succeeded model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
scbgjslpkf6wtqil succeeded model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
7llyzukiieyai6g6 succeeded model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
2lthlsbls6g7plbb succeeded model_seqtrialcox_moderna_postest_age65plus-FALSE
d3rb5y5bfftwaujo succeeded model_seqtrialcox_moderna_postest_age65plus-TRUE
47b2e4llfgphy5wv succeeded model_seqtrialcox_pfizer_postest_vax12_type-az-az
qxrq3d5ndfl6tnwi failed release_objects
kdphyuuxchjxfmty succeeded report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
5cy47zegxadttcws succeeded report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
3zkedesijjah72p2 succeeded report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
mlj5e7lz5ifidi2q succeeded report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
qkytfj7bchvuiavw succeeded report_seqtrialcox_moderna_covidcc_age65plus-FALSE
btlyhxsbujranfvm succeeded report_seqtrialcox_moderna_covidcc_age65plus-TRUE
5tzdgwrcg3gvj2qq succeeded report_seqtrialcox_moderna_coviddeath_age65plus-FALSE
ndsdwv5l5nmo2jkm succeeded report_seqtrialcox_moderna_coviddeath_age65plus-TRUE
q25le4pveou6itrf succeeded report_seqtrialcox_moderna_covidemergency_age65plus-FALSE
gqb7rnoadytvra7k succeeded report_seqtrialcox_moderna_covidemergency_age65plus-TRUE
fzlextzhodczob4a succeeded report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
p3r6tnluf4zkhjbc succeeded report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
zgdgh3rao4ujg7gq succeeded report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
3b3fcjokh5xnvkyu succeeded report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
utonpcy2yimlpfwm succeeded report_seqtrialcox_moderna_postest_age65plus-FALSE
j5dmkzd7gfmzjj6a succeeded report_seqtrialcox_moderna_postest_age65plus-TRUE
akvdquoatl7s655y succeeded report_seqtrialcox_pfizer_postest_vax12_type-az-az

Pipeline

Show Hide project.yaml
version: '3.0'

expectations:

  population_size: 100000

actions:

  ## # # # # # # # # # # # # # # # # # # # 
  ## DO NOT EDIT project.yaml DIRECTLY 
  ## This file is created by create-project.R 
  ## Edit and run create-project.R to update the project.yaml 
  ## # # # # # # # # # # # # # # # # # # # 
  ## # # # # # # # # # # # # # # # # # # # 
  ## Pre-server scripts 
  ## # # # # # # # # # # # # # # # # # # # 
  ## # # # # # # # # # # # # # # # # # # # 
  ## Extract and tidy 
  ## # # # # # # # # # # # # # # # # # # # 

  extract:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
      --output-format feather
    needs: []
    outputs:
      highly_sensitive:
        cohort: output/input.feather

  extract_report:
    run: cohort-report:v3.0.0 output/input.feather
    needs:
    - extract
    outputs:
      moderately_sensitive:
        html: output/data/reports/extract/*.html
        png: output/data/reports/extract/*.png
    config:
      output_path: output/data/reports/extract/

  data_process:
    run: r:latest analysis/data_process.R
    needs:
    - extract
    outputs:
      highly_sensitive:
        rds: output/data/data_processed.rds
        vaxlong: output/data/data_vaxlong.rds

  skim_process:
    run: r:latest analysis/data_skim.R output/data/data_processed.rds output/data_properties
    needs:
    - data_process
    outputs:
      moderately_sensitive:
        cohort: output/data_properties/data_processed*.txt

  data_process_long:
    run: r:latest analysis/data_process_long.R
    needs:
    - data_process
    outputs:
      highly_sensitive:
        processed: output/data/data_long*.rds

  data_selection:
    run: r:latest analysis/data_selection.R
    needs:
    - data_process
    outputs:
      highly_sensitive:
        data: output/data/data_cohort.rds
        feather: output/data/data_cohort.feather
      moderately_sensitive:
        flow: output/data/flowchart.csv

  skim_selection:
    run: r:latest analysis/data_skim.R output/data/data_cohort.rds output/data_properties
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        cohort: output/data_properties/data_cohort*.txt

  cohort_report:
    run: cohort-report:v3.0.0 output/data/data_cohort.feather
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        html: output/data/reports/cohort/*.html
        png: output/data/reports/cohort/*.png
    config:
      output_path: output/data/reports/cohort/

  ## # # # # # # # # # # # # # # # # # # # 
  ## Descriptive stats 
  ## # # # # # # # # # # # # # # # # # # # 

  descriptive_table1:
    run: r:latest analysis/table1.R
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        html: output/descriptive/table1/*.html
        csv: output/descriptive/table1/*.csv

  descriptive_vaxdate:
    run: r:latest analysis/vax_date.R
    needs:
    - data_selection
    outputs:
      moderately_sensitive:
        png: output/descriptive/vaxdate/*.png
        pdf: output/descriptive/vaxdate/*.pdf
        svg: output/descriptive/vaxdate/*.svg

  ## # # # # # # # # # # # # # # # # # # # 
  ## Matching 
  ## # # # # # # # # # # # # # # # # # # # 

  match_seqtrialcox_pfizer:
    run: r:latest analysis/match_seqtrialcox.R pfizer
    needs:
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/match/pfizer/match_*.rds
      moderately_sensitive:
        txt: output/match/pfizer/match_*.txt

  merge_seqtrialcox_pfizer:
    run: r:latest analysis/merge_seqtrialcox.R pfizer
    needs:
    - data_process
    - data_process_long
    - data_selection
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        txt: output/match/pfizer/merge_*.txt
        csv: output/match/pfizer/merge_*.csv
        png: output/match/pfizer/merge_*.png
        pdf: output/match/pfizer/merge_*.pdf
        html: output/match/pfizer/merge_*.html

  match_seqtrialcox_moderna:
    run: r:latest analysis/match_seqtrialcox.R moderna
    needs:
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/match/moderna/match_*.rds
      moderately_sensitive:
        txt: output/match/moderna/match_*.txt

  merge_seqtrialcox_moderna:
    run: r:latest analysis/merge_seqtrialcox.R moderna
    needs:
    - data_process
    - data_process_long
    - data_selection
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        txt: output/match/moderna/merge_*.txt
        csv: output/match/moderna/merge_*.csv
        png: output/match/moderna/merge_*.png
        pdf: output/match/moderna/merge_*.pdf
        html: output/match/moderna/merge_*.html

  combine_match:
    run: r:latest analysis/combine_match.R
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - merge_seqtrialcox_pfizer
    - merge_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/match/combined/*.csv

  ## # # # # # # # # # # # # # # # # # # # 
  ## Pfizer models 
  ## # # # # # # # # # # # # # # # # # # # 
  ## ### Overall models (''none'') 

  model_seqtrialcox_pfizer_postest_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/none/model_*.csv

  report_seqtrialcox_pfizer_postest_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/none/report_*.png

  model_seqtrialcox_pfizer_covidemergency_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/none/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/none/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/none/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/none/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/none/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/none/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/none/report_*.png

  model_seqtrialcox_pfizer_covidcc_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/none/model_*.csv

  report_seqtrialcox_pfizer_covidcc_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/none/report_*.png

  model_seqtrialcox_pfizer_coviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/none/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/none/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath none
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/none/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_none
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/none/report_*.png

  ## ### Models by primary course (''vax12_type'') 

  model_seqtrialcox_pfizer_postest_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_postest_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_covidcc_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_covidcc_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/vax12_type-pfizer-pfizer/report_*.png

  ## ### Models by clinical extremely vulnerable (''cev'') 

  model_seqtrialcox_pfizer_postest_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_postest_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_postest_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_postest_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidcc_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidcc_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/cev-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath cev-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath cev-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/cev-TRUE/report_*.png

  ## ### Models by prior infection (''prior_covid_infection'') 

  model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/prior_covid_infection-TRUE/report_*.png

  ## ### Models by age (''age65plus'') 

  model_seqtrialcox_pfizer_postest_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_postest_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_postest_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer postest age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_postest_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer postest age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_postest_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/postest/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidemergency age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidemergency_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidemergency age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidemergency/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmittedproxy1 age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmittedproxy1/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncovidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncovidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncovidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_covidcc_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_covidcc_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer covidcc age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_covidcc_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer covidcc age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_covidcc_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/covidcc/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer coviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_coviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer coviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/coviddeath/age65plus-TRUE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R pfizer noncoviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_pfizer
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R pfizer noncoviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
    - match_seqtrialcox_pfizer
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/pfizer/noncoviddeath/age65plus-TRUE/report_*.png

  ## # # # # # # # # # # # # # # # # # # # 
  ## Moderna models 
  ## # # # # # # # # # # # # # # # # # # # 
  ## ### Overall models (''none'') 

  model_seqtrialcox_moderna_postest_none:
    run: r:latest analysis/model_seqtrialcox.R moderna postest none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/none/model_*.csv

  report_seqtrialcox_moderna_postest_none:
    run: r:latest analysis/report_seqtrialcox.R moderna postest none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/none/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/none/report_*.png

  model_seqtrialcox_moderna_covidemergency_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/none/model_*.csv

  report_seqtrialcox_moderna_covidemergency_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/none/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/none/report_*.png

  model_seqtrialcox_moderna_covidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/none/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/none/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_none:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/none/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_none:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/none/report_*.png

  model_seqtrialcox_moderna_covidcc_none:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/none/model_*.csv

  report_seqtrialcox_moderna_covidcc_none:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/none/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/none/report_*.png

  model_seqtrialcox_moderna_coviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/none/model_*.csv

  report_seqtrialcox_moderna_coviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/none/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/none/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_none:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath none
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/none/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_none:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath none
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_none
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/none/report_*.png

  ## ### Models by primary course (''vax12_type'') 

  model_seqtrialcox_moderna_postest_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna postest vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_postest_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna postest vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna postest vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna postest vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidemergency_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidemergency_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_covidcc_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_covidcc_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_coviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_coviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/vax12_type-pfizer-pfizer/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath vax12_type-az-az
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath vax12_type-az-az
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-az-az/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath vax12_type-pfizer-pfizer
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/vax12_type-pfizer-pfizer/report_*.png

  ## ### Models by clinical extremely vulnerable (''cev'') 

  model_seqtrialcox_moderna_postest_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_postest_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_postest_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_postest_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidemergency_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidemergency_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_covidcc_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidcc_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_covidcc_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidcc_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_coviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_coviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/cev-TRUE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_cev-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath cev-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_cev-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath cev-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/cev-FALSE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_cev-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath cev-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_cev-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath cev-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/cev-TRUE/report_*.png

  ## ### Models by prior infection (''prior_covid_infection'') 

  model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/prior_covid_infection-TRUE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath prior_covid_infection-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath prior_covid_infection-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-FALSE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath prior_covid_infection-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath prior_covid_infection-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/prior_covid_infection-TRUE/report_*.png

  ## ### Models by age (''age65plus'') 

  model_seqtrialcox_moderna_postest_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_postest_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_postest_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna postest age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_postest_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna postest age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_postest_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/postest/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidemergency_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidemergency_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidemergency age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidemergency_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidemergency age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidemergency/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmittedproxy1 age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmittedproxy1 age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmittedproxy1/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncovidadmitted age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncovidadmitted age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncovidadmitted/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_covidcc_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_covidcc_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_covidcc_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna covidcc age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_covidcc_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna covidcc age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_covidcc_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/covidcc/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_coviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_coviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna coviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_coviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna coviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/coviddeath/age65plus-TRUE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath age65plus-FALSE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath age65plus-FALSE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-FALSE/report_*.png

  model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/model_seqtrialcox.R moderna noncoviddeath age65plus-TRUE
    needs:
    - match_seqtrialcox_moderna
    - data_selection
    - data_process_long
    outputs:
      highly_sensitive:
        rds: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.rds
      moderately_sensitive:
        txt: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.txt
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/model_*.csv

  report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE:
    run: r:latest analysis/report_seqtrialcox.R moderna noncoviddeath age65plus-TRUE
    needs:
    - data_selection
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    - match_seqtrialcox_moderna
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.csv
        svg: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.svg
        png: output/models/seqtrialcox/moderna/noncoviddeath/age65plus-TRUE/report_*.png

  ## # # # # # # # # # # # # # # # # # # # 
  ## Combine models across treatments and outcomes 
  ## # # # # # # # # # # # # # # # # # # # 

  combine_model_none:
    run: r:latest analysis/combine_model.R none
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_none
    - report_seqtrialcox_pfizer_postest_none
    - model_seqtrialcox_pfizer_covidemergency_none
    - report_seqtrialcox_pfizer_covidemergency_none
    - model_seqtrialcox_pfizer_covidadmittedproxy1_none
    - report_seqtrialcox_pfizer_covidadmittedproxy1_none
    - model_seqtrialcox_pfizer_covidadmitted_none
    - report_seqtrialcox_pfizer_covidadmitted_none
    - model_seqtrialcox_pfizer_noncovidadmitted_none
    - report_seqtrialcox_pfizer_noncovidadmitted_none
    - model_seqtrialcox_pfizer_coviddeath_none
    - report_seqtrialcox_pfizer_coviddeath_none
    - model_seqtrialcox_pfizer_noncoviddeath_none
    - report_seqtrialcox_pfizer_noncoviddeath_none
    - model_seqtrialcox_moderna_postest_none
    - report_seqtrialcox_moderna_postest_none
    - model_seqtrialcox_moderna_covidemergency_none
    - report_seqtrialcox_moderna_covidemergency_none
    - model_seqtrialcox_moderna_covidadmittedproxy1_none
    - report_seqtrialcox_moderna_covidadmittedproxy1_none
    - model_seqtrialcox_moderna_covidadmitted_none
    - report_seqtrialcox_moderna_covidadmitted_none
    - model_seqtrialcox_moderna_noncovidadmitted_none
    - report_seqtrialcox_moderna_noncovidadmitted_none
    - model_seqtrialcox_moderna_coviddeath_none
    - report_seqtrialcox_moderna_coviddeath_none
    - model_seqtrialcox_moderna_noncoviddeath_none
    - report_seqtrialcox_moderna_noncoviddeath_none
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/none/*.csv
        png: output/models/seqtrialcox/combined/none/*.png
        pdf: output/models/seqtrialcox/combined/none/*.pdf
        svg: output/models/seqtrialcox/combined/none/*.svg
        html: output/models/seqtrialcox/combined/none/*.html

  combine_model_vax12_type:
    run: r:latest analysis/combine_model.R vax12_type
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_postest_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_covidemergency_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_covidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_coviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_pfizer_noncoviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_postest_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_covidemergency_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_covidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_noncovidadmitted_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_coviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
    - report_seqtrialcox_moderna_noncoviddeath_vax12_type-pfizer-pfizer
    - model_seqtrialcox_pfizer_postest_vax12_type-az-az
    - report_seqtrialcox_pfizer_postest_vax12_type-az-az
    - model_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
    - report_seqtrialcox_pfizer_covidemergency_vax12_type-az-az
    - model_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    - report_seqtrialcox_pfizer_covidadmittedproxy1_vax12_type-az-az
    - model_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    - report_seqtrialcox_pfizer_covidadmitted_vax12_type-az-az
    - model_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
    - report_seqtrialcox_pfizer_noncovidadmitted_vax12_type-az-az
    - model_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    - report_seqtrialcox_pfizer_coviddeath_vax12_type-az-az
    - model_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
    - report_seqtrialcox_pfizer_noncoviddeath_vax12_type-az-az
    - model_seqtrialcox_moderna_postest_vax12_type-az-az
    - report_seqtrialcox_moderna_postest_vax12_type-az-az
    - model_seqtrialcox_moderna_covidemergency_vax12_type-az-az
    - report_seqtrialcox_moderna_covidemergency_vax12_type-az-az
    - model_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
    - report_seqtrialcox_moderna_covidadmittedproxy1_vax12_type-az-az
    - model_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    - report_seqtrialcox_moderna_covidadmitted_vax12_type-az-az
    - model_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
    - report_seqtrialcox_moderna_noncovidadmitted_vax12_type-az-az
    - model_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    - report_seqtrialcox_moderna_coviddeath_vax12_type-az-az
    - model_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
    - report_seqtrialcox_moderna_noncoviddeath_vax12_type-az-az
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/vax12_type/*.csv
        png: output/models/seqtrialcox/combined/vax12_type/*.png
        pdf: output/models/seqtrialcox/combined/vax12_type/*.pdf
        svg: output/models/seqtrialcox/combined/vax12_type/*.svg
        html: output/models/seqtrialcox/combined/vax12_type/*.html

  combine_model_cev:
    run: r:latest analysis/combine_model.R cev
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_cev-FALSE
    - report_seqtrialcox_pfizer_postest_cev-FALSE
    - model_seqtrialcox_pfizer_covidemergency_cev-FALSE
    - report_seqtrialcox_pfizer_covidemergency_cev-FALSE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_cev-FALSE
    - model_seqtrialcox_pfizer_covidadmitted_cev-FALSE
    - report_seqtrialcox_pfizer_covidadmitted_cev-FALSE
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
    - report_seqtrialcox_pfizer_noncovidadmitted_cev-FALSE
    - model_seqtrialcox_pfizer_coviddeath_cev-FALSE
    - report_seqtrialcox_pfizer_coviddeath_cev-FALSE
    - model_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
    - report_seqtrialcox_pfizer_noncoviddeath_cev-FALSE
    - model_seqtrialcox_moderna_postest_cev-FALSE
    - report_seqtrialcox_moderna_postest_cev-FALSE
    - model_seqtrialcox_moderna_covidemergency_cev-FALSE
    - report_seqtrialcox_moderna_covidemergency_cev-FALSE
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    - report_seqtrialcox_moderna_covidadmittedproxy1_cev-FALSE
    - model_seqtrialcox_moderna_covidadmitted_cev-FALSE
    - report_seqtrialcox_moderna_covidadmitted_cev-FALSE
    - model_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    - report_seqtrialcox_moderna_noncovidadmitted_cev-FALSE
    - model_seqtrialcox_moderna_coviddeath_cev-FALSE
    - report_seqtrialcox_moderna_coviddeath_cev-FALSE
    - model_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    - report_seqtrialcox_moderna_noncoviddeath_cev-FALSE
    - model_seqtrialcox_pfizer_postest_cev-TRUE
    - report_seqtrialcox_pfizer_postest_cev-TRUE
    - model_seqtrialcox_pfizer_covidemergency_cev-TRUE
    - report_seqtrialcox_pfizer_covidemergency_cev-TRUE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_cev-TRUE
    - model_seqtrialcox_pfizer_covidadmitted_cev-TRUE
    - report_seqtrialcox_pfizer_covidadmitted_cev-TRUE
    - model_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
    - report_seqtrialcox_pfizer_noncovidadmitted_cev-TRUE
    - model_seqtrialcox_pfizer_coviddeath_cev-TRUE
    - report_seqtrialcox_pfizer_coviddeath_cev-TRUE
    - model_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
    - report_seqtrialcox_pfizer_noncoviddeath_cev-TRUE
    - model_seqtrialcox_moderna_postest_cev-TRUE
    - report_seqtrialcox_moderna_postest_cev-TRUE
    - model_seqtrialcox_moderna_covidemergency_cev-TRUE
    - report_seqtrialcox_moderna_covidemergency_cev-TRUE
    - model_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    - report_seqtrialcox_moderna_covidadmittedproxy1_cev-TRUE
    - model_seqtrialcox_moderna_covidadmitted_cev-TRUE
    - report_seqtrialcox_moderna_covidadmitted_cev-TRUE
    - model_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    - report_seqtrialcox_moderna_noncovidadmitted_cev-TRUE
    - model_seqtrialcox_moderna_coviddeath_cev-TRUE
    - report_seqtrialcox_moderna_coviddeath_cev-TRUE
    - model_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    - report_seqtrialcox_moderna_noncoviddeath_cev-TRUE
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/cev/*.csv
        png: output/models/seqtrialcox/combined/cev/*.png
        pdf: output/models/seqtrialcox/combined/cev/*.pdf
        svg: output/models/seqtrialcox/combined/cev/*.svg
        html: output/models/seqtrialcox/combined/cev/*.html

  combine_model_age65plus:
    run: r:latest analysis/combine_model.R age65plus
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_age65plus-FALSE
    - report_seqtrialcox_pfizer_postest_age65plus-FALSE
    - model_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
    - report_seqtrialcox_pfizer_covidemergency_age65plus-FALSE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-FALSE
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
    - report_seqtrialcox_pfizer_covidadmitted_age65plus-FALSE
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
    - report_seqtrialcox_pfizer_noncovidadmitted_age65plus-FALSE
    - model_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
    - report_seqtrialcox_pfizer_coviddeath_age65plus-FALSE
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
    - report_seqtrialcox_pfizer_noncoviddeath_age65plus-FALSE
    - model_seqtrialcox_moderna_postest_age65plus-FALSE
    - report_seqtrialcox_moderna_postest_age65plus-FALSE
    - model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    - report_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    - report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    - model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    - report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    - report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    - model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    - report_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    - report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    - model_seqtrialcox_pfizer_postest_age65plus-TRUE
    - report_seqtrialcox_pfizer_postest_age65plus-TRUE
    - model_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
    - report_seqtrialcox_pfizer_covidemergency_age65plus-TRUE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_age65plus-TRUE
    - model_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
    - report_seqtrialcox_pfizer_covidadmitted_age65plus-TRUE
    - model_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
    - report_seqtrialcox_pfizer_noncovidadmitted_age65plus-TRUE
    - model_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
    - report_seqtrialcox_pfizer_coviddeath_age65plus-TRUE
    - model_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
    - report_seqtrialcox_pfizer_noncoviddeath_age65plus-TRUE
    - model_seqtrialcox_moderna_postest_age65plus-TRUE
    - report_seqtrialcox_moderna_postest_age65plus-TRUE
    - model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    - report_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    - model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    - report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    - model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    - report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    - model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    - report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    - model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    - report_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    - model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    - report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/age65plus/*.csv
        png: output/models/seqtrialcox/combined/age65plus/*.png
        pdf: output/models/seqtrialcox/combined/age65plus/*.pdf
        svg: output/models/seqtrialcox/combined/age65plus/*.svg
        html: output/models/seqtrialcox/combined/age65plus/*.html

  combine_model_prior_covid_infection:
    run: r:latest analysis/combine_model.R prior_covid_infection
    needs:
    - match_seqtrialcox_pfizer
    - match_seqtrialcox_moderna
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_postest_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_postest_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_covidemergency_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_coviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    - report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-FALSE
    - model_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_postest_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_covidemergency_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_covidadmittedproxy1_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_covidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_noncovidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_coviddeath_prior_covid_infection-TRUE
    - model_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_pfizer_noncoviddeath_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_postest_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_covidemergency_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_covidadmittedproxy1_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_covidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_noncovidadmitted_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_coviddeath_prior_covid_infection-TRUE
    - model_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
    - report_seqtrialcox_moderna_noncoviddeath_prior_covid_infection-TRUE
    outputs:
      moderately_sensitive:
        csv: output/models/seqtrialcox/combined/prior_covid_infection/*.csv
        png: output/models/seqtrialcox/combined/prior_covid_infection/*.png
        pdf: output/models/seqtrialcox/combined/prior_covid_infection/*.pdf
        svg: output/models/seqtrialcox/combined/prior_covid_infection/*.svg
        html: output/models/seqtrialcox/combined/prior_covid_infection/*.html

  ## # # # # # # # # # # # # # # # # # # # 
  ## Manuscript 
  ## # # # # # # # # # # # # # # # # # # # 

  release_objects:
    run: r:latest analysis/release_objects.R
    needs:
    - data_selection
    - combine_match
    - combine_model_none
    - combine_model_vax12_type
    - combine_model_cev
    - combine_model_age65plus
    - combine_model_prior_covid_infection
    outputs:
      moderately_sensitive:
        csv: output/release-objects/*.csv
        txt: output/files-for-release.txt
        csvsubgroup: output/release-objects/*/*.csv

State

State is inferred from the related Jobs.

Status: Failed

Timings

Timings set to UTC timezone.

  • Created:
  • Started:
  • Finished:
  • Runtime: 13:18:34

Config

  • Backend:
    TPP
  • Workspace:
    booster-effectiveness_main
  • Branch:
    main
  • Creator:
    wjchulme
  • Force run dependencies:
    False
  • Git Commit Hash:
    1fa79b8
  • Requested actions:
    • model_seqtrialcox_pfizer_postest_vax12_type-az-az
    • report_seqtrialcox_pfizer_postest_vax12_type-az-az
    • model_seqtrialcox_moderna_postest_age65plus-FALSE
    • report_seqtrialcox_moderna_postest_age65plus-FALSE
    • model_seqtrialcox_moderna_postest_age65plus-TRUE
    • report_seqtrialcox_moderna_postest_age65plus-TRUE
    • model_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    • report_seqtrialcox_moderna_covidemergency_age65plus-FALSE
    • model_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    • report_seqtrialcox_moderna_covidemergency_age65plus-TRUE
    • model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    • report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-FALSE
    • model_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    • report_seqtrialcox_moderna_covidadmittedproxy1_age65plus-TRUE
    • model_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    • report_seqtrialcox_moderna_covidadmitted_age65plus-FALSE
    • model_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    • report_seqtrialcox_moderna_covidadmitted_age65plus-TRUE
    • model_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    • report_seqtrialcox_moderna_noncovidadmitted_age65plus-FALSE
    • model_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    • report_seqtrialcox_moderna_noncovidadmitted_age65plus-TRUE
    • model_seqtrialcox_moderna_covidcc_age65plus-FALSE
    • report_seqtrialcox_moderna_covidcc_age65plus-FALSE
    • model_seqtrialcox_moderna_covidcc_age65plus-TRUE
    • report_seqtrialcox_moderna_covidcc_age65plus-TRUE
    • model_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    • report_seqtrialcox_moderna_coviddeath_age65plus-FALSE
    • model_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    • report_seqtrialcox_moderna_coviddeath_age65plus-TRUE
    • model_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    • report_seqtrialcox_moderna_noncoviddeath_age65plus-FALSE
    • model_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    • report_seqtrialcox_moderna_noncoviddeath_age65plus-TRUE
    • combine_model_none
    • combine_model_vax12_type
    • combine_model_cev
    • combine_model_age65plus
    • combine_model_prior_covid_infection
    • release_objects