This page shows the technical details of what happened when authorised researcher Will Hulme requested one or more actions to be run against real patient data in the COVID-19 Vaccine Effectiveness project, within a secure environment.
By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what
security level various outputs were written to. Outputs
highly_sensitive can never be viewed directly by a
researcher; they can only request that code runs against them. Outputs marked as
moderately_sensitive can be
viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as
moderately_sensitive can be requested for release to the public, via a controlled output review service.
Show Hide project.yaml
version: '3.0' expectations: population_size: 10000 actions: design: run: r:latest analysis/design.R outputs: moderately_sensitive: dates: analysis/lib/dates.json groups: analysis/lib/diagnosis_groups.json lookup: analysis/lib/diagnosis_groups_lookup.rds labels: analysis/lib/variable_labels.rds extract: run: cohortextractor:latest generate_cohort --study-definition study_definition --output-format feather # dummy_data_file: -- not yet in use because of https://github.com/opensafely-core/cohort-extractor/issues/611#issuecomment-893544024 needs: [design] outputs: highly_sensitive: cohort: output/input.feather process: run: r:latest analysis/process.R needs: [design, extract] outputs: highly_sensitive: cohort: output/data/data_cohort.rds descr_table1: run: r:latest analysis/table1.R needs: [design, process] outputs: highly_sensitive: rds: output/table1/*.rds moderately_sensitive: html: output/table1/*.html csv: output/table1/*.csv descr_vaxdate: run: r:latest analysis/vax_date.R needs: [design, process] outputs: highly_sensitive: rds: output/vaxdate/*.rds moderately_sensitive: png: output/vaxdate/*.png descr_diagnoses: run: r:latest analysis/diagnoses.R needs: [design, process] outputs: highly_sensitive: rds: output/diagnoses/*.rds moderately_sensitive: png: output/diagnoses/*.png rmd_report: run: r:latest -e 'rmarkdown::render("analysis/report.Rmd", knit_root_dir = "/workspace", output_dir = "/workspace/output/report" )' needs: [design, descr_table1, descr_vaxdate, descr_diagnoses] outputs: moderately_sensitive: html: output/report/report.html md: output/report/report.md figures: output/report/figures/*.png
State is inferred from the related Jobs.
Timings set to UTC timezone.
- Runtime: 11:22:32