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This page shows the technical details of what happened when authorised researcher Robert Willans requested one or more actions to be run against real patient data in the Impact of the COVID-19 pandemic on anticoagulation for atrial fibrillation project, within a secure environment.
By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what
security level various outputs were written to. Outputs
highly_sensitive can never be viewed directly by a
researcher; they can only request that code runs against them. Outputs marked as
moderately_sensitive can be
viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as
moderately_sensitive can be requested for release to the public, via a controlled output review service.
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version: '3.0' expectations: population_size: 1000 actions: generate_study_population: run: cohortextractor:latest generate_cohort --study-definition study_definition outputs: highly_sensitive: cohort: output/input.csv report_data: run: r:latest analysis/report.R needs: - generate_study_population outputs: moderately_sensitive: csv: output/report_*.csv markdown_doc: run: r:latest -e 'rmarkdown::render("analysis/markdown_report.Rmd", output_dir = "output")' needs: - generate_study_population outputs: moderately_sensitive: report: output/markdown_report.html generate_report: run: cohort-report:v3.0.0 output/input.csv needs: [generate_study_population] config: variable_types: CVD_assess_latest_date: date statins_prescribed: date age: int sex: categorical CVD_assess_latest_number: float CVD_assess_comparator: categorical CKD_code: binary CVD_code: binary T1D_code: binary T2D_code: binary Overall_diab_code: binary output_path: output/cohort_reports_outputs outputs: moderately_sensitive: reports: output/cohort_reports_outputs/descriptives_input.html reports_charts: output/cohort_reports_outputs/*.png
State is inferred from the related Jobs.
Timings set to UTC timezone.
- Runtime: 00:01:35