This page shows the technical details of what happened when authorised researcher Robert Willans requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
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- Job identifier:
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h4vqqktqpurrf4v5
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- Job identifier:
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5a2q4regq3amif2x
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- Job identifier:
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sci2fknamavhdjmj
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
markdown_doc:
run: r:latest -e 'rmarkdown::render("analysis/markdown_report.Rmd", output_dir = "output")'
needs:
- generate_study_population
outputs:
moderately_sensitive:
report: output/markdown_report.html
generate_report:
run: cohort-report:v3.0.0 output/input.csv
needs: [generate_study_population]
config:
variable_types:
CVD_assess_latest_date: date
statins_prescribed: date
cvdprevent_statins_prescribed: date
age: int
sex: categorical
CVD_assess_latest_number: float
CVD_assess_comparator: categorical
CKD_code: binary
CVD_code: binary
T1D_code: binary
T2D_code: binary
Overall_diab_code: binary
output_path: output/cohort_reports_outputs
outputs:
moderately_sensitive:
reports: output/cohort_reports_outputs/descriptives_input.html
reports_charts: output/cohort_reports_outputs/*.png
Timeline
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Created:
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Started:
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Finished:
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Runtime:
These timestamps are generated and stored using the UTC timezone on the backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- nice-audit-lipids2
- Requested by
- Robert Willans
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 2b074c2
- Requested actions
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-
run_all
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