Job request: 1253
This page shows the technical details of what happened when authorised researcher Alex Walker requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
various outputs were written to. Outputs marked as
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
can be requested for release to the public, via a controlled
output review service.
- Status: Succeeded
- Job identifier:
version: '3.0' expectations: population_size: 500 actions: generate_measure_cohort_1: # week 45 2020 to 20 2020 inclusive run: cohortextractor:latest generate_cohort --study-definition study_definition_measure --index-date-range "2020-11-02 to 2021-01-03 by week" outputs: highly_sensitive: cohort: output/input_*.csv generate_measure_cohort_2: # week 51 2020 to 03 2021 inclusive run: cohortextractor:latest generate_cohort --study-definition study_definition_measure --index-date-range "2021-01-04 to 2021-03-07 by week" outputs: highly_sensitive: cohort: output/input*.csv calculate_measures: run: cohortextractor:latest generate_measures --study-definition study_definition_measure needs: [generate_measure_cohort_1, generate_measure_cohort_2] outputs: highly_sensitive: measure: output/measure_*_rate.csv standardise_and_plot: run: python:latest python analysis/time_series_plots.py needs: [calculate_measures] outputs: moderately_sensitive: tables: output/*_rate.csv graph: output/time_series_plot.svg generate_cohort: run: cohortextractor:latest generate_cohort --study-definition study_definition_cohort outputs: highly_sensitive: cohort: output/input_cohort.csv count_by_strata: run: python:latest python analysis/all_time_counts.py needs: [generate_cohort] outputs: moderately_sensitive: table: output/counts_table.csv code_table: output/first_long_covid_code.csv code_table2: output/all_long_covid_codes.csv practice_summ: output/practice_summ.txt
These timestamps are generated and stored using the UTC timezone on the backend.
- Requested by
- Alex Walker
- Force run dependencies
- Git commit hash
- Requested actions