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Job request: 5999

Workspace:
long-covid-emis
ID:
cdv7ecxjomygw3jh

This page shows the technical details of what happened when authorised researcher Robin Park requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml
version: '3.0'

expectations:
  population_size: 2000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_cohort --output-format feather
    outputs:
      highly_sensitive:
        cohort: output/input_cohort.feather

  count_by_strata:
    run: python:latest python analysis/all_time_counts.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        table: output/counts_table.csv
        practice_distribution: output/practice_distribution.csv
        per_week: output/code_use_per_week_long_covid.csv
        per_week_pvf: output/code_use_per_week_post_viral_fatigue.csv
        code_table: output/all_long_covid_codes.csv
        practice_summ: output/practice_summ.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the backend.

Job information

Status
Succeeded
Backend
EMIS
Workspace
long-covid-emis
Requested by
Robin Park
Branch
EMIS
Force run dependencies
Yes
Git commit hash
3439252
Requested actions
  • generate_cohort
  • count_by_strata