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Job request: 693

Workspace:
ncs-hospital-disruption
ID:
6vubdxhhbj4js7qn
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Brian requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 500

actions:

  generate_measure_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2016-01-04 to 2021-01-10 by week"
    outputs:
      highly_sensitive:
        cohort: output/input*.csv

  calculate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition
    needs: [generate_measure_cohort]
    outputs:
      moderately_sensitive:
        measure: output/measure_*_rate.csv

  standardise_and_plot:
    run: python:latest python analysis/time_series_plots.py
    needs: [calculate_measures]
    outputs:
      moderately_sensitive:
        tables: output/*_rate.csv
        graph: output/time_series_plot.svg

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the backend.

Job information

Status
Failed 
Not starting as dependency failed
Backend
TPP
Workspace
ncs-hospital-disruption
Requested by
Brian
Branch
master
Force run dependencies
No
Git commit hash
e6e84ea
Requested actions
  • generate_measure_cohort
  • calculate_measures
  • standardise_and_plot
  • run_all