This page shows the technical details of what happened when authorised researcher Will Hulme requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
various outputs were written to. Outputs marked as
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
can be requested for release to the public, via a controlled
output review service.
version: '3.0' expectations: population_size: 10000 actions: # actions to plot TPP-STP size generate_cohort_stppop: run: cohortextractor:latest generate_cohort --study-definition study_definition_1_stppop --output-dir=output/cohorts outputs: highly_sensitive: cohort: output/cohorts/input_1_stppop.csv plot_stppop: run: r:latest analysis/1-plot-stppop.R needs: [generate_cohort_stppop] outputs: moderately_sensitive: log: output/logs/log-1-plot-stppop.txt figure1: output/plots/plot_stppop_map.png figure2: output/plots/plot_stppop_bar.png # actions to plot deaths over time generate_cohort_deaths: run: cohortextractor:latest generate_cohort --study-definition study_definition_2_deaths --output-dir=output/cohorts outputs: highly_sensitive: cohort: output/cohorts/input_2_deaths.csv plot_deaths: run: r:latest analysis/2-plot-deaths.R needs: [generate_cohort_deaths] outputs: moderately_sensitive: log: output/logs/log-2-plot-deaths.txt figure: output/plots/plot_deaths.png # actions to plot gp activity over time generate_cohort_activity: run: cohortextractor:latest generate_cohort --study-definition study_definition_3_activity --index-date-range "2020-01-01 to 2020-09-01 by month" --output-dir=output/measures outputs: highly_sensitive: cohort: output/measures/input_3_activity_*.csv generate_measures_activity: run: cohortextractor:latest generate_measures --study-definition study_definition_3_activity --output-dir=output/measures needs: [generate_cohort_activity] outputs: moderately_sensitive: measure_csv: output/measures/measure_*.csv plot_activity: run: r:latest analysis/3-plot-activity.R needs: [generate_measures_activity] outputs: moderately_sensitive: log: output/logs/log-3-plot-activity.txt figure: output/plots/plot_*.png
These timestamps are generated and stored using the UTC timezone on the backend.