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Job request: 13222

Organisation:
Bennett Institute
Workspace:
tpp-ctv3-codes
ID:
6hy7rjkxnihupxx3
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Becky Smith requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  extract_ctv3_dictionary:
    run: >
      sqlrunner:latest
        --output output/ctv3_dictionary.csv
        analysis/extract_ctv3_dictionary.sql
    outputs:
      moderately_sensitive:
        rows: output/ctv3_dictionary.csv

  extract_ctv3_hierarchy:
    run: >
      sqlrunner:latest
        --output output/ctv3_hierarchy.csv
        analysis/extract_ctv3_hierarchy.sql
    outputs:
      moderately_sensitive:
        rows: output/ctv3_hierarchy.csv
  
  check_ctv3_events:
    run: >
      sqlrunner:latest
        --output output/coded_events_with_missing_ctv3_codes.csv
        analysis/check_ctv3_events.sql
    outputs:
      highly_sensitive:
        rows: output/ctv3_hierarchy.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed 
JobRequestError: Internal error
Backend
TPP
Workspace
tpp-ctv3-codes
Requested by
Becky Smith
Branch
main
Force run dependencies
No
Git commit hash
c579dfd
Requested actions
  • run_all

Code comparison

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