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This page shows the technical details of what happened when authorised researcher AgzLeman requested one or more actions to be run against real patient data in the PaCa_Enzyme_Rx project, within a secure environment.
By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what
security level various outputs were written to. Outputs
highly_sensitive can never be viewed directly by a
researcher; they can only request that code runs against them. Outputs marked as
moderately_sensitive can be
viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as
moderately_sensitive can be requested for release to the public, via a controlled output review service.
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version: '3.0' expectations: population_size: 1000 actions: generate_enzyme_replace_1: run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2021-08-01 to 2021-10-01 by month" --skip-existing --output-dir=output --output-format=feather outputs: highly_sensitive: cohort: output/measures/inp*.feather generate_enzyme_replace_2: run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2021-11-01 to 2021-12-01 by month" --skip-existing --output-dir=output --output-format=feather outputs: highly_sensitive: cohort: output/measures/in*.feather generate_measures_enzymeRx: run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures needs: [ generate_enzyme_replace_1, generate_enzyme_replace_2, ] outputs: moderately_sensitive: measure_csv: output/measures/measure_enzymeRx*_rate.csv describe_ERx_rates: run: r:latest analysis/analysis_enzymeRx.R needs: [ generate_measures_enzymeRx, ] outputs: moderately_sensitive: Fig1: output/ERx_number.png Fig2: output/ERx_rates.png
State is inferred from the related Jobs.
Timings set to UTC timezone.
- Runtime: 00:19:25