Job request: 415

View Repo View project.yaml

This page shows the technical details of what happened when authorised researcher HelenCEBM requested one or more actions to be run against real patient data in the Service Restoration Observatory project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

ID Status Action
jnckxdya5wzhxbnf succeeded generate_notebook

Pipeline

Show Hide project.yaml
version: '3.0'

expectations:
  population_size: 1000

actions:
# for testing in command line use:
# cohortextractor generate_cohort --index-date-range "2020-01-01 to 2020-12-01 by month" --output-dir output/measures/tpp --expectations-population 2000 --study-definition study_definition_tpp
# followed by:
#  cohortextractor generate_measures --output-dir output/measures/tpp --study-definition study_definition_tpp


  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_tpp --index-date-range "2020-01-01 to 2020-11-01 by month" --output-dir=output/measures/tpp
    outputs:
      highly_sensitive:
        cohort: output/measures/tpp/input_*.csv

  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition_tpp --skip-existing --output-dir=output/measures/tpp
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/tpp/measure_*.csv
        
  generate_notebook:
    run: jupyter:latest jupyter nbconvert /workspace/notebooks/event_incidence.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        notebook: output/event_incidence.html

State

State is inferred from the related Jobs.

Status: Succeeded

Timings

Timings set to UTC timezone.

  • Created:
  • Started:
  • Finished:
  • Runtime: 00:00:02

Config