Job request: 2521

View Repo View project.yaml

This page shows the technical details of what happened when authorised researcher Nick Kennedy requested one or more actions to be run against real patient data in the Service Restoration Observatory project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

ID Status Action
n2264nis6a4oxfwg succeeded generate_study_population
slgnpviit6iub5ox succeeded run_model

Pipeline

Show Hide project.yaml
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  run_model:
    run: r:latest analysis/model.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        count_by_stp: output/qfit_by_stp.csv
        qfits_by_stp_log: output/qfits_by_stp_log_scale.png
        fobts_by_stp_log: output/fobts_by_stp_log_scale.png
        fobts_by_stp_cat: output/fobts_by_stp_cat.png
        qfits_by_stp_near_10: output/qfits_by_stp_near_10.png
        qfit_months_by_stp: output/qfit_months_by_stp.png

State

State is inferred from the related Jobs.

Status: Succeeded

Timings

Timings set to UTC timezone.

  • Created:
  • Started:
  • Finished:
  • Runtime: 05:24:37

Config

  • Backend:
    TPP
  • Workspace:
    sro-gastro
  • Branch:
    main
  • Creator:
    NikNakk
  • Force run dependencies:
    True
  • Git Commit Hash:
    b173ccd
  • Requested actions:
    • run_all