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Job request: 19906

Organisation:
Nuffield Trust
Workspace:
end-of-life-carequality
ID:
pnktfaqlmjkxmy7c
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Eilís Keeble requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:   

  generate_study_population_os_reports:
    run: ehrql:v0 generate-dataset analysis/os_reports/dataset_definition_os_reports.py --output output/os_reports/input_os_reports.csv.gz
    outputs:
      highly_sensitive:
        cohort: output/os_reports/input_os_reports.csv.gz
           
  os_report_charts:
    run: r:latest analysis/os_reports/01_eol_service_report_charts.R
    needs: [generate_study_population_os_reports]
    outputs:
      moderately_sensitive:
        monthly_deaths_place: output/os_reports/eol_service/deaths_month.csv
        monthly_deaths_place_plot: output/os_reports/eol_service/deaths_month_plot.png
        monthly_gp_place: output/os_reports/eol_service/gp_month.csv
        monthly_gp_place_plot: output/os_reports/eol_service/gp_month_plot.png
        monthly_aevis_place: output/os_reports/eol_service/aevis_month.csv
        monthly_aevis_place_plot: output/os_reports/eol_service/aevis_month_plot.png
        monthly_op_place: output/os_reports/eol_service/opapp_month.csv
        monthly_op_place_plot: output/os_reports/eol_service/opapp_month_plot.png

  os_report:
    run: r:latest analysis/os_reports/03_eol_service_report_html.R
    needs: [os_report_charts]
    outputs:
      moderately_sensitive:
        os_report: output/os_reports/eol_service/eol_service_report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:04:16

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
end-of-life-carequality
Requested by
Eilís Keeble
Branch
main
Force run dependencies
No
Git commit hash
2b4b3bf
Requested actions
  • generate_study_population_os_reports
  • os_report_charts
  • os_report

Code comparison

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