Skip to content

Job request: 20060

Organisation:
Nuffield Trust
Workspace:
end-of-life-carequality
ID:
j5oqnq5mvjbe5ai4
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Eilís Keeble requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:   

  generate_study_population_os_reports:
    run: ehrql:v0 generate-dataset analysis/os_reports/dataset_definition_os_reports.py --output output/os_reports/input_os_reports.csv.gz
    outputs:
      highly_sensitive:
        cohort: output/os_reports/input_os_reports.csv.gz
           
  os_report_charts:
    run: r:latest analysis/os_reports/01_eol_service_report_charts.R
    needs: [generate_study_population_os_reports]
    outputs:
      moderately_sensitive:
        monthly_deaths_place: output/os_reports/eol_service/deaths_month.csv
        monthly_deaths_place_plot: output/os_reports/eol_service/deaths_month_plot.png
        monthly_gp_place: output/os_reports/eol_service/gp_month.csv
        monthly_gp_place_plot: output/os_reports/eol_service/gp_month_plot.png
        monthly_aevis_place: output/os_reports/eol_service/aevis_month.csv
        monthly_aevis_place_plot: output/os_reports/eol_service/aevis_month_plot.png
        monthly_op_place: output/os_reports/eol_service/opapp_month.csv
        monthly_op_place_plot: output/os_reports/eol_service/opapp_month_plot.png
        monthly_gp_cause: output/os_reports/eol_service/gp_month_cod.csv
        monthly_gp_cause_plot: output/os_reports/eol_service/gp_month_cod_plot.png
        monthly_aevis_cause: output/os_reports/eol_service/aevis_month_cod.csv
        monthly_aevis_cause_plot: output/os_reports/eol_service/aevis_month_cod_plot.png
        monthly_op_cause: output/os_reports/eol_service/opapp_month_cod.csv
        monthly_op_cause_plot: output/os_reports/eol_service/opapp_month_cod_plot.png
        monthly_eladm_place: output/os_reports/eol_service/eladm_month.csv
        monthly_eladm_place_plot: output/os_reports/eol_service/eladm_month_plot.png

  os_report:
    run: r:latest analysis/os_reports/03_eol_service_report_html.R
    needs: [os_report_charts]
    outputs:
      moderately_sensitive:
        os_report: output/os_reports/eol_service/eol_service_report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:06:20

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
end-of-life-carequality
Requested by
Eilís Keeble
Branch
main
Force run dependencies
No
Git commit hash
4696468
Requested actions
  • generate_study_population_os_reports
  • os_report_charts
  • os_report

Code comparison

Compare the code used in this Job Request