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Job request: 20786

Organisation:
Nuffield Trust
Workspace:
end-of-life-carequality
ID:
eezazc3xf5nq4yvq
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Miranda Davies requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:   

  generate_study_population_os_reports:
    run: ehrql:v0 generate-dataset analysis/os_reports/dataset_definition_os_reports.py --output output/os_reports/input_os_reports.csv.gz
    outputs:
      highly_sensitive:
        cohort: output/os_reports/input_os_reports.csv.gz
           
  os_report_charts:
    run: r:latest analysis/os_reports/01_eol_service_report_charts.R
    needs: [generate_study_population_os_reports]
    outputs:
      moderately_sensitive:
        monthly_deaths_place: output/os_reports/eol_service/deaths_month.csv
        monthly_deaths_place_plot: output/os_reports/eol_service/deaths_month_plot.png
        monthly_gp_timeseries: output/os_reports/eol_service/gp_month_*.png
        monthly_gp_CSV: output/os_reports/eol_service/gp_month*.csv
        monthly_gp_Count: output/os_reports/eol_service/gp_count*.csv
        monthly_med_timeseries: output/os_reports/eol_service/eol_med_*.png
        monthly_med_CSV: output/os_reports/eol_service/eol_med*.csv
        monthly_med_Count: output/os_reports/eol_service/eol_med_count*.csv
        monthly_aevis_timeseries: output/os_reports/eol_service/aevis_month_*.png
        monthly_aevis_CSV: output/os_reports/eol_service/aevis_month*.csv
        monthly_aevis_Count: output/os_reports/eol_service/aevis_count*.csv
        monthly_op_timeseries: output/os_reports/eol_service/opapp_month_*.png          
        monthly_op_CSV: output/os_reports/eol_service/opapp_month*.csv
        monthly_op_Count: output/os_reports/eol_service/opapp_count*.csv
        monthly_eladm_timeseries: output/os_reports/eol_service/eladm_month_*.png   
        monthly_eladm_CSV: output/os_reports/eol_service/eladm_month*.csv
        monthly_eladm_Count: output/os_reports/eol_service/eladm_count*.csv
        monthly_emadm_timeseries: output/os_reports/eol_service/emadm_month_*.png   
        monthly_emadm_CSV: output/os_reports/eol_service/emadm_month*.csv
        monthly_emadm_Count: output/os_reports/eol_service/emadm_count*.csv
        monthly_nursing_timeseries: output/os_reports/eol_service/nursing_month_*.png
        monthly_nursing_CSV: output/os_reports/eol_service/nursing_month*.csv 
        montly_nursing_Count: output/os_reports/eol_service/nursing_count*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:03:45

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
end-of-life-carequality
Requested by
Miranda Davies
Branch
main
Force run dependencies
No
Git commit hash
9cee5b8
Requested actions
  • generate_study_population_os_reports
  • os_report_charts

Code comparison

Compare the code used in this Job Request