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Job request: 24386

Organisation:
Bennett Institute
Workspace:
clinical-events
ID:
dirqbw3ihjkki2e7
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "4.0"

actions:
  generate_measures_alt:
    run: >
      ehrql:v1 generate-measures
        analysis/measure_definition.py
        --output output/measures_alt.csv
        --
        --codelist codelists/opensafely-alanine-aminotransferase-alt-tests.csv
    outputs:
      moderately_sensitive:
        measures: output/measures_alt.csv

  generate_measures_chol:
    run: >
      ehrql:v1 generate-measures
        analysis/measure_definition.py
        --output output/measures_chol.csv
        --
        --codelist codelists/opensafely-cholesterol-tests.csv
    outputs:
      moderately_sensitive:
        measures: output/measures_chol.csv

  generate_measures_hba1c:
    run: >
      ehrql:v1 generate-measures
        analysis/measure_definition.py
        --output output/measures_hba1c.csv
        --
        --codelist codelists/opensafely-glycated-haemoglobin-hba1c-tests.csv
    outputs:
      moderately_sensitive:
        measures: output/measures_hba1c.csv

  generate_measures_rbc:
    run: >
      ehrql:v1 generate-measures
        analysis/measure_definition.py
        --output output/measures_rbc.csv
        --
        --codelist codelists/opensafely-red-blood-cell-rbc-tests.csv
    outputs:
      moderately_sensitive:
        measures: output/measures_rbc.csv

  # Runs test to ensure correctness of measures queries
  generate_test_dataset:
    run: >
      ehrql:v1 generate-dataset
        analysis/dataset_definition.py
        --output output/test_dataset.csv
        --test-data-file analysis/test_dataset_definition.py
        --
        --codelist codelists/opensafely-alanine-aminotransferase-alt-tests.csv
    outputs:
      highly_sensitive:
        dataset: output/test_dataset.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:50:36

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
clinical-events
Requested by
Iain Dillingham
Branch
clinical-events
Force run dependencies
No
Git commit hash
c46b522
Requested actions
  • generate_measures_chol
  • generate_measures_hba1c
  • generate_measures_rbc

Code comparison

Compare the code used in this job request