Job request: 26892

Organisation:: University of Oxford
Workspace:: pad-inequalities
ID:: 7bt254asplsgy4cq

This page shows the technical details of what happened when the authorised researcher Billy Zhong requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

highly_sensitive
- Researchers can never directly view these outputs
- Researchers can only request code is run against them
moderately_sensitive
- Can be viewed by an approved researcher by logging into a highly secure environment
- These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Action:

generate_incident

Status:

Succeeded

Job identifier:

w325uj5s725grcvc
Action:

generate_procedure

Status:

Succeeded

Job identifier:

trjwbqyx7z7prpmw
Action:

prepare

Status:

Succeeded

Job identifier:

sz3hcernbvn5mnir
Action:

describe

Status:

Succeeded

Job identifier:

zxnk5uailhy2r2hw
Action:

analyse_outcomes

Status:

Succeeded

Job identifier:

2ti657mgs2mi5lpz
Action:

generate_covid_2020

Status:

Running

Job identifier:

kwwyd26qj3cigb2u
Action:

analyse_covid

Status:

Pending

Job identifier:

zrca5pdb3kkzvsim

Status message:

waiting_on_dependencies: Waiting on dependencies
Action:

generate_trends_2019

Status:

Pending

Job identifier:

yuhy2ig2my6yocsk

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_trends_2022

Status:

Pending

Job identifier:

tb5xkwrf4327rhu3

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_trends_2023

Status:

Pending

Job identifier:

5n5p3yw3vkdvkjr3

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_covid_2023

Status:

Pending

Job identifier:

cnbaifp5bwhk4q2r

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_covid_2024

Status:

Pending

Job identifier:

ow2lrkrwqi77krj3

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_covid_2025

Status:

Pending

Job identifier:

ywvqsprusrbemidf

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

check_covid

Status:

Pending

Job identifier:

ga6ttbjnivrjajbk

Status message:

waiting_on_dependencies: Waiting on dependencies
Action:

generate_trends_2018

Status:

Pending

Job identifier:

cgsb57whzqdslz7x

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_trends_2020

Status:

Pending

Job identifier:

sehwnjq52vcz6hsu

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_trends_2024

Status:

Pending

Job identifier:

m4jaohnkgy4paqxe

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_trends_2025

Status:

Pending

Job identifier:

4vksjgariwb45ryz

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_covid_2021

Status:

Pending

Job identifier:

xjcs3p7kkz43qmn4

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_trends_2021

Status:

Pending

Job identifier:

hqq2bclvmg2dm2h2

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

generate_covid_2022

Status:

Pending

Job identifier:

ld673nquuyshq2b4

Status message:

waiting_on_db_workers: Waiting on available database workers
Action:

analyse_trends

Status:

Pending

Job identifier:

j2z2v5rp7oic4xgx

Status message:

waiting_on_dependencies: Waiting on dependencies
Action:

prepare_release

Status:

Pending

Job identifier:

s3y4q4c3tifmnnjb

Status message:

waiting_on_dependencies: Waiting on dependencies
Action:

check_trends

Status:

Pending

Job identifier:

gfrpx6um34zswujz

Status message:

waiting_on_dependencies: Waiting on dependencies

Pipeline

Show project.yaml

version: '5.0'
actions:
  generate_incident:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/raw/incident.csv.gz
      -- --cohort incident
    needs: []
    outputs:
      highly_sensitive:
        dataset: output/raw/incident.csv.gz
  generate_procedure:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/raw/procedure.csv.gz
      -- --cohort procedure
    needs: []
    outputs:
      highly_sensitive:
        dataset: output/raw/procedure.csv.gz
  generate_trends_2017:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2017.csv
      -- --year 2017 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2017.csv
  generate_trends_2018:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2018.csv
      -- --year 2018 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2018.csv
  generate_trends_2019:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2019.csv
      -- --year 2019 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2019.csv
  generate_trends_2020:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2020.csv
      -- --year 2020 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2020.csv
  generate_trends_2021:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2021.csv
      -- --year 2021 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2021.csv
  generate_trends_2022:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2022.csv
      -- --year 2022 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2022.csv
  generate_trends_2023:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2023.csv
      -- --year 2023 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2023.csv
  generate_trends_2024:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2024.csv
      -- --year 2024 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2024.csv
  generate_trends_2025:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/trends_2025.csv
      -- --year 2025 --mode trends
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/trends_2025.csv
  generate_covid_2020:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/covid_2020.csv
      -- --year 2020 --mode covid
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/covid_2020.csv
  generate_covid_2021:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/covid_2021.csv
      -- --year 2021 --mode covid
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/covid_2021.csv
  generate_covid_2022:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/covid_2022.csv
      -- --year 2022 --mode covid
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/covid_2022.csv
  generate_covid_2023:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/covid_2023.csv
      -- --year 2023 --mode covid
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/covid_2023.csv
  generate_covid_2024:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/covid_2024.csv
      -- --year 2024 --mode covid
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/covid_2024.csv
  generate_covid_2025:
    run: ehrql:v1 generate-measures analysis/measures_definition.py --output output/raw/covid_2025.csv
      -- --year 2025 --mode covid
    needs: []
    outputs:
      highly_sensitive:
        measures: output/raw/covid_2025.csv
  prepare:
    run: r:v2 analysis/prepare.R
    needs:
    - generate_incident
    - generate_procedure
    outputs:
      highly_sensitive:
        cohorts: output/internal/*.rds
        flow: output/internal/flow.csv
        quality: output/internal/quality.csv
  describe:
    run: r:v2 analysis/descriptive.R
    needs:
    - prepare
    outputs:
      highly_sensitive:
        counts: output/internal/counts.csv
  analyse_outcomes:
    run: r:v2 analysis/outcomes.R
    needs:
    - prepare
    outputs:
      highly_sensitive:
        curves: output/internal/curves.csv
        estimates: output/internal/survival_estimates.csv
        diagnostics: output/internal/survival_diagnostics.csv
  check_trends:
    run: r:v2 analysis/check_measures.R trends
    needs:
    - generate_trends_2017
    - generate_trends_2018
    - generate_trends_2019
    - generate_trends_2020
    - generate_trends_2021
    - generate_trends_2022
    - generate_trends_2023
    - generate_trends_2024
    - generate_trends_2025
    outputs:
      highly_sensitive:
        checked: output/internal/trends_checked.rds
        quality: output/internal/trends_quality.csv
  analyse_trends:
    run: r:v2 analysis/trends.R
    needs:
    - check_trends
    outputs:
      highly_sensitive:
        rates: output/internal/rates.csv
        estimates: output/internal/its_estimates.csv
        diagnostics: output/internal/its_diagnostics.csv
  check_covid:
    run: r:v2 analysis/check_measures.R covid
    needs:
    - generate_covid_2020
    - generate_covid_2021
    - generate_covid_2022
    - generate_covid_2023
    - generate_covid_2024
    - generate_covid_2025
    outputs:
      highly_sensitive:
        checked: output/internal/covid_checked.rds
        quality: output/internal/covid_quality.csv
  analyse_covid:
    run: r:v2 analysis/covid.R
    needs:
    - check_covid
    outputs:
      highly_sensitive:
        rates: output/internal/covid_rates.csv
        estimates: output/internal/covid_estimates.csv
        diagnostics: output/internal/covid_diagnostics.csv
  prepare_release:
    run: r:v2 analysis/release.R
    needs:
    - describe
    - analyse_outcomes
    - analyse_trends
    - analyse_covid
    outputs:
      moderately_sensitive:
        population: output/release/01_population_pathways*.csv
        rates: output/release/02_rates*.csv
        curves: output/release/03_outcome_curves*.csv
        models: output/release/04_models_diagnostics*.csv
      highly_sensitive:
        manifest: output/internal/release_manifest.csv

Job statistics

Status	Count	Percentage
Pending	18	75%
Running	1	4.2%
Succeeded	5	20.8%
Failed	0	0%

5 / 24 (20.8%) complete

Timeline

Created: 11 hours ago 22 Sep 2026 10:36:20 UTC
Started: 11 hours ago 22 Sep 2026 10:38:09 UTC
Runtime: 00:43:36

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status: Running
Backend: TPP
Workspace: pad-inequalities
Requested by: Billy Zhong
Branch: main
Force run dependencies: No
Git commit hash: 3e4aff2
Requested actions: generate_incident

generate_procedure

generate_trends_2018

generate_trends_2019

generate_trends_2020

generate_trends_2021

generate_trends_2022

generate_trends_2023

generate_trends_2024

generate_trends_2025

generate_covid_2020

generate_covid_2021

generate_covid_2022

generate_covid_2023

generate_covid_2024

generate_covid_2025

prepare

describe

analyse_outcomes

check_trends

analyse_trends

check_covid

analyse_covid

prepare_release

Code comparison

Compare the code used in this job request

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