Job request: 18897
- Organisation:
- PrescQIPP
- Workspace:
- the_effects_of_covid-19_on_dfms_prescribing
- ID:
- mmxaadfatuc4za6z
This page shows the technical details of what happened when the authorised researcher Rachel Seeley requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
fhpmwrbxm6o25byk - Error:
- nonzero_exit: Job exited with an error: Something went wrong with the database, please contact tech support
-
- Job identifier:
-
rm5qff6l2tldgglr - Error:
- nonzero_exit: Job exited with an error: Something went wrong with the database, please contact tech support
-
- Job identifier:
-
ytxekbf4zrzpy752 - Error:
- nonzero_exit: Job exited with an error: New data is being imported into the database, please try again in a few hours
-
- Job identifier:
-
5hzslhhzw7ep57w6 - Error:
- dependency_failed: Not starting as dependency failed
-
- Job identifier:
-
rl5lz37oj3dtpjni - Error:
- dependency_failed: Not starting as dependency failed
-
- Job identifier:
-
tospyyvoqzebx2qb - Error:
- dependency_failed: Not starting as dependency failed
-
- Job identifier:
-
6fe6t43hlfqbhvzr - Error:
- dependency_failed: Not starting as dependency failed
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 10000
actions:
generate_study_population_1:
run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2018-01-01 to 2019-12-01 by month" --output-dir=output --output-format=csv
outputs:
highly_sensitive:
cohort: output/input*.csv
generate_study_population_2:
run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-01-01 to 2021-12-01 by month" --output-dir=output --output-format=csv
outputs:
highly_sensitive:
cohort: output/input_*.csv
generate_study_population_3:
run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2022-01-01 to 2023-04-01 by month" --output-dir=output --output-format=csv
outputs:
highly_sensitive:
cohort: output/inp*.csv
generate_indication:
run: python:latest python analysis/indication_variables.py
needs: [generate_study_population_1, generate_study_population_2, generate_study_population_3]
outputs:
highly_sensitive:
cohort: output/inpu*.csv
generate_medication:
run: python:latest python analysis/medication_variables.py
needs: [generate_indication]
outputs:
highly_sensitive:
cohort: output/in*.csv
generate_measures:
run: cohortextractor:latest generate_measures --study-definition study_definition --output-dir=output
needs: [generate_medication]
outputs:
moderately_sensitive:
measure_csv: output/measure_*_rate.csv
generate_report:
run: jupyter:latest jupyter nbconvert /workspace/analysis/report*.ipynb --execute --to html --template basic --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400 --no-input
needs: [generate_measures]
outputs:
moderately_sensitive:
notebook: output/report*.html
plots: output/*.png
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 06:14:12
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Requested by
- Rachel Seeley
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 44ad72c
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request