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Job request: 24134

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
tocilizumab_sarilumab
ID:
6axlc4fdqq4sjsff

This page shows the technical details of what happened when the authorised researcher Bang Zheng requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    cox_regression
    Status:
    Status: Succeeded
    Job identifier:
    6e4i4wntrcqdiwaq

Pipeline

Show project.yaml
version: '4.0'

actions:
  generate_dataset:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/input.csv
    outputs:
      highly_sensitive:
        dataset: output/input.csv

  data_preparation:
    run: stata-mp:latest analysis/data_preparation_and_descriptives.do
    needs: [generate_dataset]
    outputs:
      highly_sensitive:
        dataset: output/main.dta
        dataset2: output/descriptives.xlsx
      moderately_sensitive:
        log: logs/data_preparation.log
        output: output/descriptives.csv
        
  cox_regression:
    run: stata-mp:latest analysis/cox.do
    needs: [data_preparation]
    outputs:
      highly_sensitive:
        dataset: output/cox.xlsx
      moderately_sensitive:
        log: logs/cox.log
        output: output/cox.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:22

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Requested by
Bang Zheng
Branch
main
Force run dependencies
No
Git commit hash
f7f8b4d
Requested actions
  • cox_regression

Code comparison

Compare the code used in this Job Request