Job request: 4461
- Organisation:
- University of Manchester
- Workspace:
- covid-diabetes-outcomes
- ID:
- phsalsp2mvihbhnp
This page shows the technical details of what happened when the authorised researcher Matthew Carr requested one or more actions to be run against real patient data within a secure environment.
By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.
The output security levels are:
-
highly_sensitive
- Researchers can never directly view these outputs
- Researchers can only request code is run against them
-
moderately_sensitive
- Can be viewed by an approved researcher by logging into a highly secure environment
- These are the only outputs that can be requested for public release via a controlled output review service.
Jobs
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- Job identifier:
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zk4v6zsjm4zj3qak
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- Job identifier:
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56xcnrzjkoryritj - Error:
- nonzero_exit: Job exited with an error code
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- Job identifier:
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fry3ibixqvcinizv - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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zvf4btif46y2f6k2 - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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vl2ryg4md2t356jv - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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tacbozlaih24yiim - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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e6oxh3obbwtnqgkt - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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yz2si6kycshqibqb - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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y7nalnvuhjmtzcsb - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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3bhzfqhxofrqcr3l - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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vjbkn4eo2gzdnhom - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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6bqqsuhmuqycmeew - Error:
- dependency_failed: Not starting as dependency failed
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- Job identifier:
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7z727con6hlhhayu - Error:
- dependency_failed: Not starting as dependency failed
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 100000
actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition_part1
outputs:
highly_sensitive:
cohort: output/input_part1.csv
data_cleaning:
run: stata-mp:latest analysis/010_cleaning.do
needs: [generate_cohort]
outputs:
highly_sensitive:
analysis_dataset: output/input_part1_clean.dta
matching_groups_1_and_2:
run: stata-mp:latest analysis/021_matching_groups_1_and_2.do
needs: [data_cleaning]
outputs:
highly_sensitive:
analysis_dataset: output/matched_groups_1_and_2.dta
matching_groups_1_and_3:
run: stata-mp:latest analysis/022_matching_groups_1_and_3.do
needs: [data_cleaning]
outputs:
highly_sensitive:
analysis_dataset: output/matched_groups_1_and_3.dta
matching_groups_1_2_and_3:
run: stata-mp:latest analysis/023_matching_groups_1_2_and_3.do
needs: [matching_groups_1_and_2, matching_groups_1_and_3]
outputs:
highly_sensitive:
analysis_dataset: output/matched_groups_1_2_and_3.dta
analyses_option1_table1:
run: stata-mp:latest analysis/110_analyses_option1_table1_demographics.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table1_demographics.dta
table2: output/results/option1_table1_demographics.csv
analyses_option1_table2:
run: stata-mp:latest analysis/120_analyses_option1_table2_rates.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table2_rates.dta
table2: output/results/option1_table2_rates.csv
analyses_option1_table3:
run: stata-mp:latest analysis/130_analyses_option1_table3_hazardratios.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table3_hazardratios.dta
table2: output/results/option1_table3_hazardratios.csv
analyses_option1_table4:
run: stata-mp:latest analysis/140_analyses_option1_table4_stratified_rates.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table4_stratified_rates.dta
table2: output/results/option1_table4_stratified_rates.csv
analyses_option1_table5:
run: stata-mp:latest analysis/150_analyses_option1_table5_stratified_hazardratios.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table5_stratified_hazardratios.dta
table2: output/results/option1_table5_stratified_hazardratios.csv
analyses_option2_table1a:
run: stata-mp:latest analysis/210_analyses_option2_table1a_demographics_groups_1_and_2.do
needs: [matching_groups_1_and_2]
outputs:
moderately_sensitive:
table1: output/results/option2_table1a_demographics_groups_1_and_2.dta
table2: output/results/option2_table1a_demographics_groups_1_and_2.csv
analyses_option2_table1b:
run: stata-mp:latest analysis/211_analyses_option2_table1b_demographics_groups_1_and_3.do
needs: [matching_groups_1_and_3]
outputs:
moderately_sensitive:
table1: output/results/option2_table1b_demographics_groups_1_and_3.dta
table2: output/results/option2_table1b_demographics_groups_1_and_3.csv
analyses_option3_table1:
run: stata-mp:latest analysis/310_analyses_option3_table1_demographics.do
needs: [matching_groups_1_2_and_3]
outputs:
moderately_sensitive:
table1: output/results/option3_table1_demographics.dta
table2: output/results/option3_table1_demographics.csv
Timeline
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Created:
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Started:
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Finished:
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Runtime: 02:02:19
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job request
- Status
-
Failed
- Backend
- TPP
- Workspace
- covid-diabetes-outcomes
- Requested by
- Matthew Carr
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 443918f
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this job request