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Job request: 5010

Organisation:
Public Health England
Workspace:
hest_os_study
ID:
wgiaam75ha2tlyfe
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Becky Smith requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  descriptive_figures:
    run: r:latest analysis/report.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        figure: output/descriptive.png
  
  descriptive_tables:
    run: r:latest analysis/full_table_script.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        table_one: output/Table1.html
        table_one_one: output/Table1-1.html
        table_one_two: output/Table1-2.html
        table_one_three: output/Table1-3.html
        table_one_four: output/Table1-4.html
        table_one_five: output/Table1-5.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 02:59:48

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
hest_os_study
Requested by
Becky Smith
Branch
main
Force run dependencies
Yes
Git commit hash
5c87215
Requested actions
  • run_all

Code comparison

Compare the code used in this job request