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Job request: 6520

Organisation:
Bennett Institute
Workspace:
counts
ID:
jxseoct32fc7qfp3
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Colm Andrews requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_cohort
    Status:
    Status: Succeeded
    Job identifier:
    fnqsuvkxludpdtvt
  • Action:
    initial_counts
    Status:
    Status: Succeeded
    Job identifier:
    27fue5wajytqs7jx

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition  --output-format=csv.gz
    outputs:
      highly_sensitive:
        cohort: output/input.csv.gz

  initial_counts:
    run: r:latest analysis/highlevelcount.r
    needs: [generate_cohort]
    outputs:      
      moderately_sensitive:
        table: output/ctv3_primis.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 02:30:21

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
counts
Requested by
Colm Andrews
Branch
count
Force run dependencies
No
Git commit hash
7e2d332
Requested actions
  • run_all

Code comparison

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