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Job request: 6547

Organisation:
Bennett Institute
Workspace:
counts
ID:
a3lzbolqoalxntaz
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Colm Andrews requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    initial_counts
    Status:
    Status: Succeeded
    Job identifier:
    lzglafhax2lt4xxd

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition  --output-format=csv.gz
    outputs:
      highly_sensitive:
        cohort: output/input.csv.gz

  initial_counts:
    run: r:latest analysis/highlevelcount.r
    needs: [generate_cohort]
    outputs:      
      moderately_sensitive:
        table: output/ctv3_primis.csv
        table2: output/ctv3_primis_perc.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:59

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
counts
Requested by
Colm Andrews
Branch
count
Force run dependencies
No
Git commit hash
55f5852
Requested actions
  • initial_counts

Code comparison

Compare the code used in this Job Request