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Job request: 13378

Organisation:
Bennett Institute
Workspace:
ethnicity-short-data-report-notebook
ID:
kdphsicr35oqdvak
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Colm Andrews requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    time_tables
    Status:
    Status: Succeeded
    Job identifier:
    wugo4377rgwc2msj

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:
  split_codelist:
    run: r:latest analysis/00_trim_snomed_codelist.r
    outputs:
      highly_sensitive:
        data: codelists/ethnicity_*.csv

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_time --output-dir "output/time" --output-format feather
    needs: [split_codelist]
    outputs:
      highly_sensitive:
        cohort: output/time/data/input_time.feather

  time_tables:
    run: r:latest analysis/time/times.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        data: output/time/*.csv
        plots: output/time/*.png

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:03:09

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
ethnicity-short-data-report-notebook
Requested by
Colm Andrews
Branch
notebook
Force run dependencies
No
Git commit hash
4e335eb
Requested actions
  • time_tables

Code comparison

Compare the code used in this job request