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Job request: 2944

Organisation:
Bennett Institute
Workspace:
ethnicity-short-data-report-test
ID:
d7nnlxphkuimlpll
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Rohini Mathur requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohorts
    Status:
    Status: Failed
    Job identifier:
    hd5tufc5hgydsdoc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    initial_counts
    Status:
    Status: Failed
    Job identifier:
    zcldsztwc47z2kny
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_cohorts:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  initial_counts:
    run: stata-mp:latest analysis/00_describe_snomed_ethnicity.do
    needs: [generate_cohorts]
    outputs:
      highly_sensitive:
        data: output/snomed_ethnicity_counts.dta
      moderately_sensitive:
        log: logs/00_describe_snomed_ethnicity.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 158:48:37

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
ethnicity-short-data-report-test
Requested by
Rohini Mathur
Branch
write-study-def
Force run dependencies
No
Git commit hash
1117685
Requested actions
  • run_all

Code comparison

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